Detail information of BGIOSGA035474_circ_g.3


General Information
CircRNA Name BGIOSGA035474_circ_g.3
ID in PlantcircBase osi_circ_009126
Alias Chr11:24056977_24058938(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 18192535-18194496  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA035474
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035474_circ_g.1 BGIOSGA035474_circ_g.2 BGIOSGA035474_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA035474-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTAAGCCAGGAA
GACTTTGACACAATTGTTGAATTATCAAAATTTAAGggaaaactatatcaattatcggcctatc
actgttgggaaggatgacagtggagttaaaagaatgaattttcttgctcgtgctgctgaatcta
tagcggac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAAACTATATCAATTATCGGCCTATCACTGTTGGGAAGGATGACAGTGGAGTTAAAAGAATG
AATTTTCTTGCTCGTGCTGCTGAATCTATAGCGGACGCTGATATTGTTAATGTACAAATAAGAA
GATATCGACAGTGGCAATTGTCCCAAGCTGCTTGTTTGTCTTCATCTATAGTTCCGTAAGTATA
TGGTGGTTATTATCTGCTGTAATCGATTTAATTCAAATGTCTCACTGATCCACTAATCTATTTC
ACATCTTACAGTGCTGCTTTGATGCATGGGAATAGAGAGATCCTTGAAGCAGTAAAGCTCAAAC
CTTATCATCAATTACTTTTTTTGTTTAGTTTATTTTTGGTAATTCTGGCTAATTGAATTGGATA
ATAAATCTGTAGGGTGAGCGAAACTTCAATAGGTTTGGTGGATGGTTGGGAAAGTACTCGACCA
CAAATAAAAACATAAGGCTACTGGAAGATGCCCATAGTCATATTCTTGCCTCCCAGCAAGCAAA
TTTGGACAGGTGGATATACTTTTACATATTCTACAAATTTATCCTTTCTGGCATTCCATGGATT
CTGTTTTTACTCTTCACATGTATGATGCATCGTGTATCAGGTTGTAAAGCAAGGTGATTGATTG
TTTTCTTCTCTTGTTTTATTCTGTCACAAGCAGCATCTTAAATATCTGACTAACTATATAAATT
TGCCAAACAAACCCAAGCTTTTTTTTTTTTAGTTTGGTAAGGATTTGAATATTGTTACATCTTT
GGGTTGATATGATCTTAAATTTTTTTTTATCATAGTATTAAGTGTACGGTACTGAGTTAACTAG
CCAAGCTGACTTCCATTGTGCTTATAAATCTGAATGGATTTAGGCCAGTTCATGGTTTCACATA
GATTTTCATGTTATTATCTGAATAAAAATGTTTTGTGTATTAGTCCTAAATCGTAATTCCAAAC
CCTAAGGATAATCAGCTCATCAGTGAATCGGCTAATTAGTTTAGCACTTGGAAGTTGGAACTTA
ATCAAATAACATGGAATTCCAGCATGATATACCTTAATACCTCCATCTATGCTCAAGAAGACAG
GCACTAAATTTCCATTGAATTTCTTTCAATGGCTGGCAACATATTAATTGATGGACATGTCATG
CTTGTTTCCTGATGTTACTATGTTTGAAAATCATGGTTTTCTTAACAGTGAGCAAATTAAACAA
GCCTTACTTTTCTTAACTTGCCTGAATCAGTCAATAAGCCAAGGAAAATCACCATTGGTTTTTG
AACTTTGTTTTAGCAACATTGAATAAAAACCCATGCCTTTTCAAGATGTTGTGGTCCACATGAG
TACAATCTGATCTTTAAGATGATTTTTGATGGTTTATCATGAGATAATCCAATCTTATATTGTT
GAGAACTGCAGGGAGTCATTGAGGCTGGATTACCTCACTCTTCTCTTGAGACAATTGACTGATC
CACTGAAGACAATGCCCAAGGTATATGTAGATGTGATCTATTAATTAACTCCTTGTTTTGTTCT
ATGGCATTATACTTGAATGTTTCATGATGAGGATAATGACCTGGACACTGGCATTTTAGAAATT
TATCTTGATACCTCTAAATGCATTAGTGGACTAGCCATCTTCTGGAGTATTCTGAAGTAAGGAG
TCTCTTTAATTTCATTTGCTGAAAAAAAAAATCTGCAGGAGAGCGTCCATACCTTGACTTGTGT
ACACGGCTCATCAATTCTGAGTTTTAACATACTGTTATCTTGCCTTTATGTAATAGTATTACCA
GTCTTCTTACAATAATTCCCTGTTAAGAATCTTTACCTGAGCTATCTGCTGGTTATCTTATATT
TGTAAAATCACAGGATGAAGCTGTGCAAAAAGTGGTGGAGTTTATGGATACCTACTCTTTAAGC
CAGGAAGACTTTGACACAATTGTTGAATTATCAAAATTTAAG
Conservation Information
Conserved circRNAs osa_circ_009650
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021