Plant Circular RNA Database

Detail information of Os04g0620000_circ_g.13

			
						 General Information
					
						CircRNA Name
						Os04g0620000_circ_g.13
					
						ID in PlantcircBase
						osa_circ_025324
					
						Alias
						Os_ciR9578
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 31508299-31511730  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os04g0620000						
					
						Parent gene annotation
						
							C-type ATP-binding cassette (ABC) transporter, Arsenic (As) deto
xification, Reduction of As in grains (Os04t0620000-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os04g0620000_circ_g.7 Os04g0620000_circ_g.8 Os04g0620000_circ_g.9 Os04g0620000_circ_g.10 Os04g0620000_circ_g.11 Os04g0620000_circ_g.12 Os04g0620000_circ_g.14 Os04g0620000_circ_g.15 Os04g0620000_circ_g.16 Os04g0620000_circ_g.17 Os04g0620000_circ_g.18 Os04g0620000_circ_g.19 Os04g0620000_circ_g.20 Os04g0620000_circ_g.21 Os04g0620000_circ_g.22 Os04g0620000_circ_g.23 Os04g0620000_circ_g.24 Os04g0620000_circ_g.25 Os04g0620000_circ_g.26 Os04g0620000_circ_g.27 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0620000-01:9

General Information
CircRNA Name	Os04g0620000_circ_g.13
ID in PlantcircBase	osa_circ_025324
Alias	Os_ciR9578
Organism	Oryza sativa
Position	chr4: 31508299-31511730 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os04g0620000
Parent gene annotation	C-type ATP-binding cassette (ABC) transporter, Arsenic (As) deto xification, Reduction of As in grains (Os04t0620000-01)
Parent gene strand	-
Alternative splicing	Os04g0620000_circ_g.7 Os04g0620000_circ_g.8 Os04g0620000_circ_g.9 Os04g0620000_circ_g.10 Os04g0620000_circ_g.11 Os04g0620000_circ_g.12 Os04g0620000_circ_g.14 Os04g0620000_circ_g.15 Os04g0620000_circ_g.16 Os04g0620000_circ_g.17 Os04g0620000_circ_g.18 Os04g0620000_circ_g.19 Os04g0620000_circ_g.20 Os04g0620000_circ_g.21 Os04g0620000_circ_g.22 Os04g0620000_circ_g.23 Os04g0620000_circ_g.24 Os04g0620000_circ_g.25 Os04g0620000_circ_g.26 Os04g0620000_circ_g.27
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0620000-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT
AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATctgtcgaccaacatgggcatctaatgca
ctcagtggatcatcaaatatgtagacatctgaatcagaataaacagctcttgccattgagactc
tctgtttt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1212
Transcript exons: 31508299-31508451,31508667-31508765,31508850-31509056,31
509506-31509646,31509926-31510093,31510376-31510469,3151
0553-31510659,31511214-31511348,31511623-31511730
CTGTCGACCAACATGGGCATCTAATGCACTCAGTGGATCATCAAATATGTAGACATCTGAATCA
GAATAAACAGCTCTTGCCATTGAGACTCTCTGTTTTTGTCCCCCACTAATGTTAACTCCTCTTT
CTCCAATCTCTGTTAGGTCACCACCTGGGAGTAAGTCAAGGTCATGCCGTAATGAAGTGACATC
TATTGCTTTCTCGTAGCGTGGAGGTTGGAAGGGAGACCCAAACAATATATTGTCCCGGACAGTT
GCATTGAAGATCCATGAAACTTGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTAT
TCGATCCTGACACTGGTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCC
AGTGCTTCCTACTATTGCAACCAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTT
GGTCTCTCAGCCTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAG
GATCAAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTT
CAATGACACTTTACAATTAACCACCTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAATCTT
AAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCAGAG
AGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGATGAAGCTATTCAG
CGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAATTTCATCATCACGGATGTCCTGCACTTTT
GACTGGAAACTTTGCTCCCAAGCATAACATTTGACCGTATCCATTGCAGCTAATATTTCATTCA
TTAGACTGATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTAT
GATAACAGTCTGAATTGGGAACAAAAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCT
AGTTGTGCGTATAGAAGGACCATGGCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAA
GTTGCTGGCACACTTGCTGAAGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGA
GGCAAACTTCTTTCGACTATCATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT
						
					

						Genomic sequence
						
							CTGTCGACCAACATGGGCATCTAATGCACTCAGTGGATCATCAAATATGTAGACATCTGAATCA
GAATAAACAGCTCTTGCCATTGAGACTCTCTGTTTTTGTCCCCCACTAATGTTAACTCCTCTTT
CTCCAATCTCTGTTAGGTCACCACCCTGACAACAAGCATAAGAAGATATATTTTCTTGTCAATT
TGCAGGTACAAGAATATAAAGCGCAAAACCAAGATAGAAAAAGGTATTGGCAACATAATTTCAA
CATGACAAATGAAAAAAAAAACACACTCCCCAGCAAGTTATCTATCAAATGAAAGCTCGAGTGT
CAAAAATTTCCAGAACGATCTCTGAAGACTGAAATAGTTAGAACTTACTGGGAGTAAGTCAAGG
TCATGCCGTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGTTGGAAGGGAGACCCAA
ACAATATATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAGAAGCCATAAAAGGTTC
AATATAACAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATTGAAGATCCATGAAACT
TGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGATCCTGACACTGGTGGTA
TTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGCTTCCTACTATTGCAAC
CAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCTCTCAGCCTGCCAAAAT
TTGAAAAATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATGCAGTGTTAACAACTGT
ATAAAATTATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATAGTATTGTGAAGCTTAC
TACCAAATCATCAATTCATTATGAACTACGGAGACATCTGTAATAGACATCTTTCTATGGATCG
ACCTCACTACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCCATTCATGAAGCATGCT
AGTCTATCAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTTCTTTTCAGTACTCCAG
ACAACAGAACAATAATATATGTGTTATATTATAATATCAATGAATGATGAGAGTTGAATGTGTG
ATAGTCAACATAGATATATTTAGATACCAGGCAAATATCTGAAACATGAAATTACCTGCGATTC
CCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATCAAGAGGTGGATTGGGC
AGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAATGACACTTTACAATTAA
CCACCTGTCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTATGAGTACTAACAAAAGAGTCG
TTGAACAAGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGACCAAAATTGTAAAAAC
CATTGTACTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTACAAGAATGATTATCAAT
CCAAACATATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAAAGTGGGAAACTTAACA
AGACATAATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAAT
CTTAAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCA
GAGAGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGATGAAGCTATT
CAGCTGCAGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACAATAAGGGATGCAACAA
CTCATTCTCATATCTATTTTAAGTTTGAGTAACTAAGTAAATTATTGTAAACAAACTTTATAGG
ACCAGGAAGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAACTTATTGTGTAATAAGG
AGAGTTCATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATGAAATTGACACAAGTGA
AAGATAACTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAA
TTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCCAAGCATAACATCTAAC
CAAGAAAATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCTAGTAAAAACACAAGTA
AATGTAAAGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCATTAGACTGATTCTCCT
GTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTATGATAACAGTCTGGTAA
ATTAAATAAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAAAAGTTTGCTTAAAAGT
AAAATCGTTATTTGAAATGCATATATCATTCATAAAAATAGCATAATCTGAAAATCAGCAACTG
TTAAGTGCCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATGAGCAATATGGATTAGC
CAAATATTAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGACAACATCAAAGAATTT
CTTACGGGGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACAATACAACCTCAGGATA
GATAACAGGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCTAATGTGAACTCTAGGC
TCCATATAAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTAAAAAGAATCAAAATAT
AAAAAACACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTTAAAAATGCAACATAAG
ACCTTCCATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAACAAAAGAACCAACATGG
CTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCATGGCAATAACAATGCG
GAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAAAAGTAAAAAAAGTACA
AACCAAATGTACAACATAAGATATAAATAACCATAGCTCCATATTGTAGCACATATTGTATTTC
TTGCTCCATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTTACTTATCAATTCAGAC
ATCAACAAGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATGTTGCCAAACAATATTT
AAAATCAATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAAATAAAATCACACCTGA
AGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTAT
CATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT
						
					

			
		

Sequences
Splice junction sequence	ATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTATCATT AGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGATctgtcgaccaacatgggcatctaatgca ctcagtggatcatcaaatatgtagacatctgaatcagaataaacagctcttgccattgagactc tctgtttt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1212 Transcript exons: 31508299-31508451,31508667-31508765,31508850-31509056,31 509506-31509646,31509926-31510093,31510376-31510469,3151 0553-31510659,31511214-31511348,31511623-31511730 CTGTCGACCAACATGGGCATCTAATGCACTCAGTGGATCATCAAATATGTAGACATCTGAATCA GAATAAACAGCTCTTGCCATTGAGACTCTCTGTTTTTGTCCCCCACTAATGTTAACTCCTCTTT CTCCAATCTCTGTTAGGTCACCACCTGGGAGTAAGTCAAGGTCATGCCGTAATGAAGTGACATC TATTGCTTTCTCGTAGCGTGGAGGTTGGAAGGGAGACCCAAACAATATATTGTCCCGGACAGTT GCATTGAAGATCCATGAAACTTGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTAT TCGATCCTGACACTGGTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCC AGTGCTTCCTACTATTGCAACCAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTT GGTCTCTCAGCCTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAG GATCAAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTT CAATGACACTTTACAATTAACCACCTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAATCTT AAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCAGAG AGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGATGAAGCTATTCAG CGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAATTTCATCATCACGGATGTCCTGCACTTTT GACTGGAAACTTTGCTCCCAAGCATAACATTTGACCGTATCCATTGCAGCTAATATTTCATTCA TTAGACTGATTCTCCTGTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTAT GATAACAGTCTGAATTGGGAACAAAAGAACCAACATGGCTGCACCGACCAATGCAGCAGGGCCT AGTTGTGCGTATAGAAGGACCATGGCAATAACAATGCGGAAAGGAGCAGACCATAGACTGTGAA GTTGCTGGCACACTTGCTGAAGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGA GGCAAACTTCTTTCGACTATCATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT
Genomic sequence	CTGTCGACCAACATGGGCATCTAATGCACTCAGTGGATCATCAAATATGTAGACATCTGAATCA GAATAAACAGCTCTTGCCATTGAGACTCTCTGTTTTTGTCCCCCACTAATGTTAACTCCTCTTT CTCCAATCTCTGTTAGGTCACCACCCTGACAACAAGCATAAGAAGATATATTTTCTTGTCAATT TGCAGGTACAAGAATATAAAGCGCAAAACCAAGATAGAAAAAGGTATTGGCAACATAATTTCAA CATGACAAATGAAAAAAAAAACACACTCCCCAGCAAGTTATCTATCAAATGAAAGCTCGAGTGT CAAAAATTTCCAGAACGATCTCTGAAGACTGAAATAGTTAGAACTTACTGGGAGTAAGTCAAGG TCATGCCGTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGTTGGAAGGGAGACCCAA ACAATATATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAGAAGCCATAAAAGGTTC AATATAACAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATTGAAGATCCATGAAACT TGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGATCCTGACACTGGTGGTA TTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGCTTCCTACTATTGCAAC CAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCTCTCAGCCTGCCAAAAT TTGAAAAATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATGCAGTGTTAACAACTGT ATAAAATTATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATAGTATTGTGAAGCTTAC TACCAAATCATCAATTCATTATGAACTACGGAGACATCTGTAATAGACATCTTTCTATGGATCG ACCTCACTACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCCATTCATGAAGCATGCT AGTCTATCAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTTCTTTTCAGTACTCCAG ACAACAGAACAATAATATATGTGTTATATTATAATATCAATGAATGATGAGAGTTGAATGTGTG ATAGTCAACATAGATATATTTAGATACCAGGCAAATATCTGAAACATGAAATTACCTGCGATTC CCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATCAAGAGGTGGATTGGGC AGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAATGACACTTTACAATTAA CCACCTGTCAAATTTAAAAGGAAAAAAAATAGTAAGGTGACTATGAGTACTAACAAAAGAGTCG TTGAACAAGAAAAGCAGAGAACTATCTCAAGCCAGCATTGGACTGTGACCAAAATTGTAAAAAC CATTGTACTAATTTTCTCTGCCAAAGACAGATGAAAATTAACTGGTACAAGAATGATTATCAAT CCAAACATATAAGTTCAGAAAATGATATACTTCTTAACTTGTACAGAAAGTGGGAAACTTAACA AGACATAATTTACAGCTTTTTGCACACCTGAGTTATCAGATTTGGCAGCATAAAAAGTGGAAAT CTTAAGACAGCAAACAGTGAAAGTGATGTGAACGCCTTTGCTGGTGTCAAGTCACCTCCCAGCA GAGAGTATACACCAAATGAAACCACAGTGACAATAACGGGGATACTGTTTAGGATGAAGCTATT CAGCTGCAGCAGACAAGGAAAAATACAAAAGATAATAGTGAGCCGACAATAAGGGATGCAACAA CTCATTCTCATATCTATTTTAAGTTTGAGTAACTAAGTAAATTATTGTAAACAAACTTTATAGG ACCAGGAAGCACCAGTACAATCGATACTATAGCATGCAACTCCAAAACTTATTGTGTAATAAGG AGAGTTCATGGATGCACGATTAAAAAAGAGATCATATATAGCAGAATGAAATTGACACAAGTGA AAGATAACTTAAATACAAAATGGACATACCGCAGCAAGCAATTGAGCGCTGCGGAACCATGAAA TTTCATCATCACGGATGTCCTGCACTTTTGACTGGAAACTTTGCTCCCAAGCATAACATCTAAC CAAGAAAATGTTTGGAACAGTTTATACCAAAATTTTAGTACTACTTCTAGTAAAAACACAAGTA AATGTAAAGCATACTTGACCGTATCCATTGCAGCTAATATTTCATTCATTAGACTGATTCTCCT GTCAGTCCTTTGCAACCCTTCCTTGGTAAGTTTTTGCATTTTGCTTATGATAACAGTCTGGTAA ATTAAATAAAGAAAATGTTAACAGTCAGATCTATGTTGAAAGTAGCAAAAGTTTGCTTAAAAGT AAAATCGTTATTTGAAATGCATATATCATTCATAAAAATAGCATAATCTGAAAATCAGCAACTG TTAAGTGCCCTGGCAATTTGCATTATAAGCTTCAAAAGAGAAAGCATGAGCAATATGGATTAGC CAAATATTAGGGATTTAAGCATTGACTTGATCAACTCCAATTTATGGACAACATCAAAGAATTT CTTACGGGGTATGGCAGAAAACTAAGCAGACGTACAAACAGTACTACAATACAACCTCAGGATA GATAACAGGAAGTAGAATCAACAACTAAATGATGGCATGAAAGACTCTAATGTGAACTCTAGGC TCCATATAAGAATCGATATATCAGTACAATCTTTCTGCACATTCCCTAAAAAGAATCAAAATAT AAAAAACACAAAGTAGATATTGGTAATGTAGGGACCAGATAGAAAGTTAAAAATGCAACATAAG ACCTTCCATAATTGAATGTCTAAAGAGAAATCTACCTGAATTGGGAACAAAAGAACCAACATGG CTGCACCGACCAATGCAGCAGGGCCTAGTTGTGCGTATAGAAGGACCATGGCAATAACAATGCG GAAAGGAGCAGACCATAGACTGTGAAGTTGCTGGCACACTTGCTGCAAAAGTAAAAAAAGTACA AACCAAATGTACAACATAAGATATAAATAACCATAGCTCCATATTGTAGCACATATTGTATTTC TTGCTCCATTGCTCTTTCCTAACAAAACATTTCCACGGTTTTCCATTTACTTATCAATTCAGAC ATCAACAAGGTATCTAACATATCATTTGGTTTTTTATCTAATTTTATGTTGCCAAACAATATTT AAAATCAATAATGTTGAAGAACTGGGTAACACTGATTAAACCTATGAAATAAAATCACACCTGA AGAGATTCTGCGTCAGTTGAAATCAAATTGGTTATCCTCCCAGAGGCAAACTTCTTTCGACTAT CATTAGTTAGTCGCAAAGACTTACGGAAAACAGCTGCGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.32285271

Conservation Information
Conserved circRNAs	NA
PMCS	0.32285271

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							31511293-31508301(-)
						
					

						Potential amino acid sequence
						
							MVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCY
AWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFT
SLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFS
WESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVP
QVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRV
SMARAVYSDSDVYIFDDPLSALDAHVGRQIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESL
QQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRT
DRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTV
VSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLL
PNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEI
PPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGG
DLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDAHVGRQIAAVFRKSLRLTNDS
RKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFP
IQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSA
QLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVN
CKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVA
IVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPR
YEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDA
HVGRQIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLL
YAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQ
SFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSL
FAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQ
AERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSW
IFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR
AVYSDSDVYIFDDPLSALDAHVGRQ(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	31511293-31508301(-)
Potential amino acid sequence	MVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCY AWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFT SLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFS WESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVP QVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRV SMARAVYSDSDVYIFDDPLSALDAHVGRQIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESL QQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRT DRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTV VSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLL PNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEI PPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGG DLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDAHVGRQIAAVFRKSLRLTNDS RKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFP IQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQSFQSKVQDIRDDEISWFRSA QLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVN CKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVA IVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPR YEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDA HVGRQIAAVFRKSLRLTNDSRKKFASGRITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLL YAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQ SFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSL FAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQ AERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSW IFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR AVYSDSDVYIFDDPLSALDAHVGRQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os04g0620000_circ_g.13

Address

Any questions?

Supported by