Detail information of Os04g0375900_circ_g.3


General Information
CircRNA Name Os04g0375900_circ_g.3
ID in PlantcircBase osa_circ_023537
Alias NA
Organism Oryza sativa
Position chr4: 18362153-18362728  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0375900
Parent gene annotation Kinesin, motor region domain containing protein. (Os04t0375900-0
1)
Parent gene strand -
Alternative splicing Os04g0375900_circ_g.1 Os04g0375900_circ_g.2 Os04g0375900_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0375900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAAATAATAAAAGTGATGCTATACCAGTGATAGAAGAGCAGGTCAATCCCATGTCAGTACA
TGAATTCTCCGGTTCCATATTTGACAAGGCATAGTCttattagcactgttgagaaaagtcaagc
actcttgagctagagatttctgtggggcagaaaaaacaagagagaattcatcaggcaagatgat
tataagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATTAGCACTGTTGAGAAAAGTCAAGCACTCTTGAGCTAGAGATTTCTGTGGGGCAGAAAAAA
CAAGAGAGAATTCATCAGGCAAGATGATTATAAGAAGGTACAAACACATTAAGCGAATAAAATG
AGTCAGTGAATTAAAAAAAAAACAGGTTAACCTTAATCCCAGTGCTGCGGGCCGTAAGTTTATC
CTTGGGATCTTCTGCTTGCTCAAATTTCAAATGCACTTCAGGAGTTTTTGGCTCTGGTGCAATC
GTGTTGATTCTCCGGGCACATTCTATGTCCCACTTTTCTGCCCTCACGCTCACTGGCCGAGTGC
TAAGAAGCTTCAATGAGTTTGAAATCTCTCTCAGTCGGTCACTCAACTTTGGGGAGGATAGGGT
ACTGCTGGCAGGAGTCTTCTCAACAAGGTTATCTGGGAGTGCCAGTCAGGTGATTATGTGATCA
TACTTTCCATTCTCGTAATGAACTTGGCAACCAAATAATAAAAGTGATGCTATACCAGTGATAG
AAGAGCAGGTCAATCCCATGTCAGTACATGAATTCTCCGGTTCCATATTTGACAAGGCATAGTC
Conservation Information
Conserved circRNAs osi_circ_014270
PMCS 0.114583218
Functional Information
Coding potential Y
Potential coding position 18362693-18362190(+)
18362712-18362676(-)
Potential amino acid sequence MNSPVPYLTRHSLISTVEKSQALLS*(+)
MEPENSCTDMGLTCSSITDNLVEKTPASSTLSSPKLSDRLREISNSLKLLSTRPVSVRAEKWDI
ECARRINTIAPEPKTPEVHLKFEQAEDPKDKLTARSTGIKKSLAQECLTFLNSANKTMPCQIWN
RRIHVLTWD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017