Detail information of BGIOSGA014789_circ_g.2


General Information
CircRNA Name BGIOSGA014789_circ_g.2
ID in PlantcircBase osi_circ_014525
Alias Chr04:25507415_25510390(MH63RS2), Chr04:25529769_25532745(ZS97RS2), Chr04:25507415_25510390(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23524008-23525959  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014789
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014789_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA014789-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAACAAAAGACTACAATTTGAGACAGAATTGTATGCTTCAACCAGACCAATTGGTAGGATT
GATTAATACATATGGTAAAACCAAGTGAATTATGATcctcttcacgtcgaggcacccaattgtt
tgaacgaagatcaaccacatcacgaaccataaacctcagacgtggtgccaactgaaggtttgtt
gttaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTCACGTCGAGGCACCCAATTGTTTGAACGAAGATCAACCACATCACGAACCATAAACCT
CAGACGTGGTGCCAACTGAAGGTTTGTTGTTAACTCCTTCATCTGAATGAAGTAGGTATCATTA
ATTCGACGAGATTTTGGGTTCTCGTCAAGCTGTTTACCAATTGTATTGAAGAACTGACAAATAG
CCTCAACGTTTTCCTCTTCAGGGCAAGCCTTTTTATCAGGTCCAGACCCCAAGAGTTCCTGCAT
ATAGAACAGATTAGACAAGCTACCCGTGAATAATAATAACTTTATTACCAATTTGCTAATGCAT
ACCTGAACAATGTGATGAACTATCTTTTCAGGTACCATCTTTTGCTTAAGTAGCTCACCAATTA
GACGGATATTTCCAAGTGTTCTTAGTTTGACAATCCTTTCTTTGTCCCTTCTCTCCATCTCTTG
GTCAGGGCCAGTCAATTTTGCTATTTCAGCCCTTAGGCTCTCAGCGCCTTCAAATGCTTCCTGA
CAATTGTTCAACAGCACGCGCTTGAACGTAATCTCTTTGCCACCTGGTTCTTCCGAAGGGAATG
ATGGTAGCTTCTCATTGAGATCGGAACAAAGTTGAGCATACATCGGACAGAAGGTGGGCTCAAA
AACAGCCTTCTCAAATATGAGAGAAATAACATCCTGAATAAAAAGCAGAAGATATATTAATCAC
AAGGAGGCTAGCAAAAAATAGAAAGCTACAGAACAGAGATCTAAAATCATCCAACCTTTAGAAT
ATCAGCAGTGGTAATTCCAGATTCCATTAGTTGGCCCTTGAGTAGATCAAATTTCTCCGGTGTC
AGTTTGTTTAGTATACTGCATACGCACAAGAAAAACAGGCAGCAAGTCAATGCCAGACAACTTT
CTGTGTTATAAAGAAATAAATAAATAAAAGCACTCAAAAAGGAACAAAAACATGAAAAAGACTG
TAACGATAATTATGATACCCTTTCACTGTTTTCAGGACTCTATCTTTCTCTGAGAGATTGCCTC
TTCTAGCTGACCAAGGTACCTCAGCCTTGATAAGAGCAGGAGTCGGGCCAACCTGAAAGACATA
CATCAGCAAAGGCCTGATCACAAAGTCATAAATACATACAAGTATACAAGTTATGAAAGAAAAA
TACATATTAAAACATGTGAATTGATTGCATACAACAAAATAATATGGACTGTCACATACAAGAC
AAACTGACATTGTTCTGTACCAATTTATAACCCGACACTTCTGTGGTTTACATTTCAACATTCA
TTGCAAGAAAGATAGGGTTAAAAGAGCATAGATGGCACTAGTGATCAATTGTGAACGAGGGGAC
AGCAAAATGTGTAAATAACACTGTTGAGTTGGGTCAACGATCCCGCAAAAGGCAAAACCTAGTT
AGTTTAGTAATTTGATGAATAATAATAGCCATGGATTAACCGAGGAGGTTACATCAGACATAAT
CAACAGAGGGAACCAACATTAATTCCGAATCAGTAGCTACCACTAAGCAACATTGTTTAGCGCA
GAAAGAAATATGAGCCTATTCAAGATATGAAAAAAATAATGAATAAGGTCAAATGGAACAAACG
TTACTGATAATTCTTGTCTTGAACATACCTGAGCTTTTGAAGCAAACTGGTGGTTTAATTGATC
CTGCCTGTTAACTTGCTCTTGTTGCCGACCACTTGAAGCATGTGCTGCTTTAGCTTCACGAATG
TTGTCCCAGGACTTCTCTTCATTAGCTGCCGGAGGTTGAACCGTGCGTGCACGCCAGTCACGGT
TATCTGTCTCACCATACCGATTGTGCGGTTGCGCCTGGGTTTGTGTCTGCACTTGCACCTGAAC
AACAAAAGACTACAATTTGAGACAGAATTGTATGCTTCAACCAGACCAATTGGTAGGATTGATT
AATACATATGGTAAAACCAAGTGAATTATGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021