Detail information of BGIOSGA014789_circ_g.3


General Information
CircRNA Name BGIOSGA014789_circ_g.3
ID in PlantcircBase osi_circ_014526
Alias Chr04:25508502_25509041(MH63RS2), Chr04:25508502_25509041(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23525096-23525635  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA014789
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014789_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGCGCAGAAAGAAATATGAGCCTATTCAAGATATGAAAAAAATAATGAATAAGGTCAAATGG
AACAAACGTTACTGATAATTCTTGTCTTGAACATACcatcagcaaaggcctgatcacaaagtca
taaatacatacaagtatacaagttatgaaagaaaaatacatattaaaacatgtgaattgattgc
atacaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCAGCAAAGGCCTGATCACAAAGTCATAAATACATACAAGTATACAAGTTATGAAAGAAAAA
TACATATTAAAACATGTGAATTGATTGCATACAACAAAATAATATGGACTGTCACATACAAGAC
AAACTGACATTGTTCTGTACCAATTTATAACCCGACACTTCTGTGGTTTACATTTCAACATTCA
TTGCAAGAAAGATAGGGTTAAAAGAGCATAGATGGCACTAGTGATCAATTGTGAACGAGGGGAC
AGCAAAATGTGTAAATAACACTGTTGAGTTGGGTCAACGATCCCGCAAAAGGCAAAACCTAGTT
AGTTTAGTAATTTGATGAATAATAATAGCCATGGATTAACCGAGGAGGTTACATCAGACATAAT
CAACAGAGGGAACCAACATTAATTCCGAATCAGTAGCTACCACTAAGCAACATTGTTTAGCGCA
GAAAGAAATATGAGCCTATTCAAGATATGAAAAAAATAATGAATAAGGTCAAATGGAACAAACG
TTACTGATAATTCTTGTCTTGAACATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021