Detail information of AT2G35650_circ_g.4


General Information
CircRNA Name AT2G35650_circ_g.4
ID in PlantcircBase ath_circ_016670
Alias 2:14986476-14987158
Organism Arabidpsis thaliana
Position chr2: 14986476-14987158  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G35650
Parent gene annotation Probable mannan synthase 7
Parent gene strand +
Alternative splicing AT2G35650_circ_g.2 AT2G35650_circ_g.3 AT2G35650_circ_g.5 AT2G35650_circ_g.6 AT2G35650_circ_g.7
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G35650.2:3
AT2G35650.4:3
AT2G35650.3:3
AT2G35650.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATGCATGATGACGAGATTACAGGAGATGTCTCTAAGTTACCACTTTACAATAGAGCAGCAAG
TTGGATCTTCAACATTTGCCTTCTTTGGGTTCAACGgtttgtgagcaatctattgcagctgctt
gcaaaatctcatggccatcgaatcgtataataattcaagtgcttgatgattccacggatccagc
cagtaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGTGAGCAATCTATTGCAGCTGCTTGCAAAATCTCATGGCCATCGAATCGTATAATAATTC
AAGTGCTTGATGATTCCACGGATCCAGCCAGTAAGGTCCTTGTTTAACCTCTATAGACACTTGT
CCCTTTCTCGTCTAAATCCCTCTGTTTTAGACTCATGATTGTGTTGTGTTAAAGTGAGTTCCTT
AACATTTGATTATGTGGCAATGATGGAAGGAAACAGGAGTTGGTGAAAAAGGAGTGTGACAGAT
GGTCTAAAGAAGGTGTCAACATAACGTTTGAGATAAGGGACAACAGGAACGGATACAAAGCTGG
TGCGTTGAGAGAAGGAATGAGGCATAGCTATGTGAAGCAGTGTGATTATGTTGCTATCTTTGAT
GCTGATTTCCAGCCTGATCCTGACTTCCTCCACCGCACTGTTCCATTCTTAATTCACAATCCCA
AGTTAGCACTTGTACAAGGCCGGTGGGAGTTTGGTAACATTCCTTAGTTACCTTTCTTTTCTTT
TTCCATCATAAGTTTATAGATTGTACATGCTTTGAGATTTTTCTTTGCAAACAATCTCAGTGAA
CGCGGGTCAATGCATGATGACGAGATTACAGGAGATGTCTCTAAGTTACCACTTTACAATAGAG
CAGCAAGTTGGATCTTCAACATTTGCCTTCTTTGGGTTCAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.240258945
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020