Detail information of Os11g0248200_circ_g.1


General Information
CircRNA Name Os11g0248200_circ_g.1
ID in PlantcircBase osa_circ_008990
Alias NA
Organism Oryza sativa
Position chr11: 8021357-8021425  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os11g0248466
Parent gene annotation Hypothetical protein. (Os11t0248466-00)
Parent gene strand +
Alternative splicing Os11g0248466_circ_g.1 Os11g0248466_circ_g.2
Support reads 2
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0248200-01:1
Os11t0248466-00:1
Os11t0248200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCCAGTTCCTCTCATCATTAAGTTCCACGATcatgcaagtattcaataatcgaactctcag
cccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGCAAGTATTCAATAATCGAACTCTCAGCCCATTTCTCCAGTTCCTCTCATCATTAAGTTCC
ACGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.458111473
Functional Information
Coding potential Y
Potential coding position 8021361-8021359(-)
Potential amino acid sequence MIVELNDERNWRNGLRVRLLNTCMIVELNDERNWRNGLRVRLLNTCMIVELNDERNWRNGLRVR
LLNTCM(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017