Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020036_circ_g.1 |
ID in PlantcircBase | zma_circ_002517 |
Alias | circ1585 |
Organism | Zea mays |
Position | chr7: 87376934-87391162 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d020036 |
Parent gene annotation |
Embryonic flower 2; VEF family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d020036_circ_g.2 Zm00001d020036_circ_g.3 Zm00001d020036_circ_g.4 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d020036_T008:8 Zm00001d020036_T013:8 Zm00001d020036_T005:8 Zm00001d020036_T003:9 Zm00001d020036_T007:8 Zm00001d020036_T002:9 Zm00001d020036_T009:8 Zm00001d020036_T012:8 Zm00001d020036_T006:8 Zm00001d020036_T004:8 Zm00001d020036_T011:7 Zm00001d020036_T001:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.006012479 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR399c-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |