Detail information of Zm00001d020036_circ_g.2


General Information
CircRNA Name Zm00001d020036_circ_g.2
ID in PlantcircBase zma_circ_009308
Alias zma_circ_0002767, GRMZM2G157422_C1
Organism Zea mays
Position chr7: 87388749-87391162  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d020036
Parent gene annotation Embryonic flower 2; VEF family protein
Parent gene strand +
Alternative splicing Zm00001d020036_circ_g.1 Zm00001d020036_circ_g.3 Zm00001d020036_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d020036_T005:6
Zm00001d020036_T007:6
Zm00001d020036_T004:6
Zm00001d020036_T006:6
Zm00001d020036_T002:7
Zm00001d020036_T001:6
Zm00001d020036_T008:6
Zm00001d020036_T003:7
Zm00001d020036_T009:6
Zm00001d020036_T012:6
Zm00001d020036_T013:6
Zm00001d020036_T011:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCCGCACAAGAGGCTGGTGCAAGAGATATGTCTTTGTCTCCATATAGTAGTTACTCATATAA
TGATGTCCCACCTTCGTCATTATCAGATATCATAAGgattcagataaccatatcactttctgga
agtacaaatactgagttgcaaacacattatgtctttcctctttatgttctgttagctagaccca
ctagtaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 663
Transcript exons: 87388749-87388863,87388959-87389115,87389192-87389260,87
390220-87390356,87390469-87390528,87391038-87391162
GATTCAGATAACCATATCACTTTCTGGAAGTACAAATACTGAGTTGCAAACACATTATGTCTTT
CCTCTTTATGTTCTGTTAGCTAGACCCACTAGTAACCTTTCACTTGAAGGGCATTCTCCAATTT
ATCGATTCAGTCGGGTTTGCTTGCTTACTTCCTTTAGTGAACATGGAAATAAGGACAACAGTGA
AGCTACATTCATCATTCCTGACGTGAAGAGTTTGTCAACCTCCCGTGCTTGCAACCATGATATT
ATCTTTATTAGCTGTGGGCAAGTTGGACAAAGTAATGGTGAAGATAACTGCTCTGGGAACCATG
TGGAAGATTCTTCTCTCCAAATGCTTGAAGGGAAATGCTCCTGGGGTAAAATACCAACTAATTT
ACTTGCTTCATCTTTGGAGAGTTGTGTCAATTTAAGTTTGGGACATATTGTGGAGTTGGCATCT
AAAGTTACAATGAGACCAAGCTTCTTAGAGCCAAAATTTCTGGAGCAAGACAGTTGCTTGACAT
TTTGCTCTCATAAGGTTGATGCTGTGGGTTCATATAAACTACAACTATGCATGTCCGCACAAGA
GGCTGGTGCAAGAGATATGTCTTTGTCTCCATATAGTAGTTACTCATATAATGATGTCCCACCT
TCGTCATTATCAGATATCATAAG

Genomic sequence GATTCAGATAACCATATCACTTTCTGGAAGTACAAATACTGAGTTGCAAACACATTATGTCTTT
CCTCTTTATGTTCTGTTAGCTAGACCCACTAGTAACCTTTCACTTGAAGGGGTAAGTCTAGCCT
TTTTCAGTTTGTGAAGCGAGTCGCAAGTTTTCATGCCTGTCTACCAAATGATCTCATTCTTACC
TATTATCCTATTTTGCAGCATTCTCCAATTTATCGATTCAGTCGGGTTTGCTTGCTTACTTCCT
TTAGTGAACATGGAAATAAGGACAACAGTGAAGCTACATTCATCATTCCTGACGTGAAGAGTTT
GTCAACCTCCCGTGCTTGCAACCATGATATTATCTTTATTAGCTGTGGTAACAGCGCACATCCC
ATATGAGTTCTTTTTTCTCCCCATTTCTGTGCCATCATTAAATTATTTTAATCCAAAAGGGCAA
GTTGGACAAAGTAATGGTGAAGATAACTGCTCTGGGAACCATGTGGAAGATTCTTCTCTCCAAA
GTAAGTTTATGTGGATATTTTTGAGCAGATATTATGTGATTTCTTTTCCAGCAGGATTAACATG
TTAACAGGCTCATTTGTTGTGAGTAGTTGTATCTATCTTTATTCATGGCAAGAGGATCCTTAAT
GTCATTGTGACTACTTTATGAAACATGTGTTTTTAATCAATCTCTTAAGAATATCTGCTGATGC
TTAAGCTGAAAAACTAAGCTGAGAGTTGGAGAGTGAAACCCTAACCCTAACAAGGGGGCTGGAT
GATGAATTAATACACTGAGTTAGTTGGGCTAGGTCCATTACACAGGGGTGACAAGGTAAATACA
TGGGGTACACCCCAAACCTGTGTGGAAGGAGGCTCCGGAGTCAACCACCCAATCGATGGGAGAG
GGTGATGTTGGGGAAGCCGCAAGGTGTGCGGAAAGAGCCAGGGGAGGTGCTTCGACATGGCTAC
TAGGATGGGAGGCCCAGCGCAGCTGGAGAGGGGCCAGACGGGCCGGCGGTGGACGACGAAGGTC
CGACAGCCGGGGCAGGGACCGACGGCTGGACAGGGCGGGCGGCACGCCAACGAGGAGGGAAGGC
CACACGCCGACTGGTGCGTGCAGGGCCGCCCGGGGTGGGGCTGCACGGGGTTGGCCGCGCGCGG
GTGCACAGGGCGCTGCGGGGAATGGTGCGGCAGCCTGGAGGAGGTCGGCGGCTAGAGGTAGGGG
AAGCCGGCGGCTGGGGATGGGAGGGAGGAGAAGAGAGAGAAAGATTGGCTCTGGTGCTAAGTTG
GAGAGTGAAACCCTAACCCTAACAAGGGGGTTGGGTGATGAATTAATACACTGAGTTAGTTGGG
CTAGGCCCTTTACACAGGGGTGACAAGGTAAATACACGGGGTACACCCCAAACCCTAAACGGGT
AACACTTAGGTTTGTGTTCTTATTGATTGGAATAATGACCATCCATGTTATGCATTTTAACAGT
GCTTGAAGGGAAATGCTCCTGGGGTAAAATACCAACTAATTTACTTGCTTCATCTTTGGAGAGT
TGTGTCAATTTAAGTTTGGGACATATTGTGGAGTTGGCATCTAAAGTTACAATGAGACCAAGCT
TCTTAGAGGTATGTCAAATTGATCCCTGCCCCTGTAGTATTTAAGATTCACATCACTAAAACAT
CGATTGTAATGTTCAACTTGCTTGGGATCAAAGGCTCTGTTGTTTTATACATGCAGCCAAAATT
TCTGGAGCAAGACAGTTGCTTGACATTTTGCTCTCATAAGGTTGATGCTGTGGTAAGGTCTCCT
CTATTTTTACATTCATGTTTAATATGATTTTGTCCAGGGATCTCCATGTTTCTCTTATTACTAA
TGCTACTAATACATTCTTTGAGTCCAAGATTAGTGTGGTTAACAGGTATGCATCACTTGCAACT
GCCAGTCCATTGGATGACATGTCACTGCATCACAAGTTTATAAATTCAGCTTTGGGCATACATT
GCCACCGAATGCGCTATATCCACTTTTCCATGGAATTGCTGGAAAATGACTTTAGCTTTCAATT
TAAATGCCCCAAACTTTTGGCAAAAGTATTTCAATTTTTATGAGGGGTAATAAACTTGTGAAGG
GGGGAATCTACAAGCTTTTAGTTGTTGCTATTCTGCAGTATAAGAGCATCAGATCTATCGGGTC
CCACTTTGGAAACCTGTGTTGAGCACTTGAGTTGCTTCTTTCTTTTTGTGGTGCTGGTGGTTGG
AGGGGGAAGAGGGGTTGGCAGTCAAAATCATTAACCTTTATTCTTGCAGGGTTCATATAAACTA
CAACTATGCATGTCCGCACAAGAGGCTGGTGCAAGAGATATGTCTTTGTCTCCATATAGTAGTT
ACTCATATAATGATGTCCCACCTTCGTCATTATCAGATATCATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.136491687
Functional Information
Coding potential Y
Potential coding position 87389261-87391159(+)
Potential amino acid sequence MLEGKCSWGKIPTNLLASSLESCVNLSLGHIVELASKVTMRPSFLEPKFLEQDSCLTFCSHKVD
AVVRYASLATASPLDDMSLHHKFINSALGIHCHRMRYIHFSMELLENDFSFQFKCPKLLAKGSY
KLQLCMSAQEAGARDMSLSPYSSYSYNDVPPSSLSDIIRIQITISLSGSTNTELQTHYVFPLYV
LLARPTSNLSLEGHSPIYRFSRVCLLTSFSEHGNKDNSEATFIIPDVKSLSTSRACNHDIIFIS
CGQVGQSNGEDNCSGNHVEDSSLQMLEGKCSWGKIPTNLLASSLESCVNLSLGHIVELASKVTM
RPSFLEPKFLEQDSCLTFCSHKVDAVVRYASLATASPLDDMSLHHKFINSALGIHCHRMRYIHF
SMELLENDFSFQFKCPKLLAKGSYKLQLCMSAQEAGARDMSLSPYSSYSYNDVPPSSLSDIIRI
QITISLSGSTNTELQTHYVFPLYVLLARPTSNLSLEGHSPIYRFSRVCLLTSFSEHGNKDNSEA
TFIIPDVKSLSTSRACNHDIIFISCGQVGQSNGEDNCSGNHVEDSSLQMLEGKCSWGKIPTNLL
ASSLESCVNLSLGHIVELASKVTMRPSFLEPKFLEQDSCLTFCSHKVDAVVRYASLATASPLDD
MSLHHKFINSALGIHCHRMRYIHFSMELLENDFSFQFKCPKLLAKGSYKLQLCMSAQEAGARDM
SLSPYSSYSYNDVPPSSLSDIIRIQITISLSGSTNTELQTHYVFPLYVLLARPTSNLSLEGHSP
IYRFSRVCLLTSFSEHGNKDNSEATFIIPDVKSLSTSRACNHDIIFISCGQVGQSNGEDNCSGN
HVEDSSLQMLEGKCSWGKIPTNLLASSLESCVNLSLGHIVELASKVTMRPSFLEPKFLEQDSCL
TFCSHKVDAVVRYASLATASPLDDMSLHHKFINSALGIHCHRMRYIHFSMELLENDFSFQFKCP
KLLAKGSYKLQLCMSAQEAGARDMSLSPYSSYSYNDVPPSSLSDII(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019