Detail information of AT4G38120_circ_g.2


General Information
CircRNA Name AT4G38120_circ_g.2
ID in PlantcircBase ath_circ_035308
Alias NA
Organism Arabidpsis thaliana
Position chr4: 17889901-17891513  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G38120
Parent gene annotation ARM repeat superfamily protein
Parent gene strand -
Alternative splicing 4_circ_ag.2 AT4G37680_circ_g.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ig.7 AT4G37750_circ_g.1 AT4G37760_circ_g.1 AT4G37800_circ_g.1 AT4G37800_circ_g.2 AT4G37820_circ_g.1 AT4G37870_circ_g.1 AT4G37870_circ_g.2 AT4G37870_circ_g.3 AT4G37870_circ_g.4 AT4G37870_circ_g.5 AT4G37870_circ_g.6 AT4G37870_circ_g.7 AT4G37870_circ_g.8 AT4G37870_circ_g.9 AT4G37870_circ_g.10 AT4G37870_circ_g.11 AT4G37870_circ_g.12 AT4G37870_circ_g.13 AT4G37870_circ_g.14 AT4G37870_circ_g.15 AT4G37870_circ_g.16 AT4G37900_circ_g.1 AT4G37900_circ_g.2 AT4G37900_circ_g.3 AT4G37910_circ_g.1 AT4G37910_circ_g.2 AT4G37910_circ_g.3 AT4G37920_circ_g.1 AT4G37930_circ_g.1 AT4G37930_circ_g.2 AT4G37930_circ_g.3 AT4G37930_circ_g.4 AT4G37930_circ_g.5 AT4G37930_circ_g.6 AT4G37930_circ_g.7 AT4G37930_circ_g.8 AT4G37930_circ_g.9 AT4G37930_circ_g.10 AT4G37930_circ_g.11 AT4G37930_circ_g.12 AT4G37930_circ_g.13 AT4G37930_circ_g.14 AT4G37930_circ_g.15 AT4G37930_circ_g.16 AT4G37930_circ_g.17 AT4G37930_circ_g.18 AT4G37930_circ_g.19 AT4G37930_circ_g.20 AT4G37930_circ_g.21 AT4G37930_circ_g.22 AT4G37930_circ_g.23 AT4G37940_circ_g.1 AT4G37980_circ_g.1 AT4G37980_circ_g.2 AT4G37980_circ_g.3 AT4G37990_circ_g.1 AT4G38040_circ_g.1 AT4G38060_circ_g.1 AT4G38060_circ_g.2 AT4G38100_circ_g.1 AT4G38100_circ_g.2 AT4G38100_circ_g.3 AT4G38100_circ_g.4 AT4G38100_circ_g.5 AT4G38120_circ_g.1 AT4G38120_circ_g.3 AT4G38120_circ_g.4 AT4G38120_circ_g.5 AT4G38120_circ_g.6 AT4G38120_circ_g.7 AT4G38120_circ_g.8 AT4G38120_circ_g.9 AT4G38130_circ_g.1 AT4G38130_circ_g.2 AT4G38130_circ_g.3 AT4G38130_circ_g.4 AT4G38130_circ_g.5 AT4G38160_circ_g.1 AT4G38160_circ_g.2 AT4G38180_circ_g.1 AT4G38200_circ_g.1 AT4G38200_circ_g.2 AT4G38200_circ_g.3 AT4G38200_circ_g.4 AT4G38200_circ_g.5 AT4G38200_circ_g.6 AT4G38200_circ_g.7 AT4G38200_circ_g.8 AT4G38200_circ_g.9 AT4G38200_circ_g.10 AT4G38220_circ_g.1 AT4G38220_circ_g.2 AT4G38220_circ_g.3 AT4G38230_circ_g.1 AT4G38230_circ_g.2 AT4G38240_circ_g.1 AT4G38240_circ_g.2 AT4G38240_circ_g.3 AT4G38240_circ_g.4 AT4G38240_circ_g.5 AT4G38240_circ_g.6 AT4G38240_circ_g.7 AT4G38240_circ_g.8 AT4G38250_circ_g.1 AT4G38260_circ_g.1 AT4G38260_circ_g.2 AT4G38260_circ_g.3 AT4G38270_circ_g.1 AT4G38270_circ_g.2 AT4G38280_circ_g.1 AT4G38280_circ_g.2 4_circ_ag.3
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G38120.3:7
AT4G38120.1:7
AT4G38120.4:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGCAGTCAGATGTAAATGGTGTATCCATTAATCTATCATACTGAAGATCTTCGGTTCCCTT
AAATCCAGATATTGCGCGAAGGCATCCATCCAAAACcttaacattaccagtagtaacacaggaa
agaaatgcttgcacggttctctccaaccaccttgtatctaccgcgcaggatagatggtgagaat
ttgatgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACATTACCAGTAGTAACACAGGAAAGAAATGCTTGCACGGTTCTCTCCAACCACCTTGTA
TCTACCGCGCAGGATAGATGGTGAGAATTTGATGACTGTTGATGGGGAAAAGGTAACACATCTT
GGTCCACTGACTTTATACTTGTCATGCATCTCAATTTTACATATTTTGAAATACTCCCCAGTGC
CCGAACTGCATTGGATTTAACCTAACAATAGAATTCCGAAAATGATGATGGCAAATGTGCACAT
AACTACAATACTAAAAACTACTGTGTGATCCATAAGAAAAAAGTTCTGCTAGCCAGTTTTCGAC
ATCCATATGGATCAGACGAGTGCAGTGAATTTATCTATCAAAGAAACATAATATTTGGATTACA
AGTTACGGTGTAAACAACTAATTAATTTAACAGAGGAATATTTGGGATTAAGAAGCATATCACT
GAGTAAAAAGAGATACTAATTTATCAAAATATGTTGGGAACGATTTTTATTACCTTGTCCCCAT
CCTCAGTTAGGCGCAAAGCACATTCTATTAGTGCATCCACAACTTGTGAAGTTGTCTTCAATCC
TACTTAGGAGGATAAAAGAAAAGTAAATCCAAACGTTGTATCAGGTCTAATCATAACGTCAGTA
CTAGTACCTTCAAAGGACCTATCATCAACGCGGTATCGCAGAGCATCGCATAGATTGGCCAAAG
CCCATGATGCTGTTATACGCACCTGAATTGACAAAAATAAATCCCATTGCAGTAGAACAATAAA
ATATAAAATGCATAGATCATGAGAACAAATAAATGAAAGTCAGTAATGCAATACCGAGGTCAAG
GAGTCCCGGGTATTCGCTTCAACAGCTAAGATAAATTTTTCATATATCTCCGCACTGCATCCAC
AAAGTTCTTTAAGTTCTTGACCATGAATATCTTGTCAGGGTTGAGTTAGGACAAGCAACAGACA
GTGACAAAGGGTTAAGTTACCTTAAAGAAGTTTCTGGAAAACATGAAATAACACCAATCGCTCG
GCAAGCTGCTGATCTGACTGAAGGTGTTTTGTCATGCAATGCAGCGGTTATCTACAAAAACTAA
AAGACATTAGGCACCTACTGTAAAACTAAAGTCGAGATAGTAATACCAACAATCCTAAAAAGGC
TTCAATACTTACAATTGATGAAGTAATAAAGTCCTTTTCCTGCTTATTGAAAGCGGAAAATATG
GAGGATGTAATACCAGCAAAGCAAGTAACTGTAGTGCTCCTCACCTTCCAAACATAGGAAGAAA
TTCAGGACCGCGGATATTATGCAAACTACAGCAGCTACATCGATGATTGTACTATTAGTTGTAC
AAAAACATTAACTTGTAAAAAATTTAACCCACCACTGCAGAACCATGGTGTAACACCAGAACTA
TATGTTTACGAATAGCCTCAGACCATTGGTCACATCCTGCCTGAAAGATTGGCTCTTGGGTATT
ATCAAATCCATATGATGGTGCAGATGAGATTCTTATTGACCTTATGCAGTCAGATGTAAATGGT
GTATCCATTAATCTATCATACTGAAGATCTTCGGTTCCCTTAAATCCAGATATTGCGCGAAGGC
ATCCATCCAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.155227496
Functional Information
Coding potential Y
Potential coding position 17891445-17889903(-)
Potential amino acid sequence MDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQWSEAIRKHIVLVLHHGSAVVRSTTVTC
FAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEIYEKFI
LAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLTEDGDK
VKSNAVRALGSISKYVKLRCMTSIKSVDQDVLPFPHQQSSNSHHLSCAVDTRWLERTVQAFLSC
VTTGNVKVLDGCLRAISGFKGTEDLQYDRLMDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAG
CDQWSEAIRKHIVLVLHHGSAVVRSTTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTP
SVRSAACRAIGVISCFPETSLSAEIYEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVD
DRSFEGLKTTSQVVDALIECALRLTEDGDKVKSNAVRALGSISKYVKLRCMTSIKSVDQDVLPF
PHQQSSNSHHLSCAVDTRWLERTVQAFLSCVTTGNVKVLDGCLRAISGFKGTEDLQYDRLMDTP
FTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQWSEAIRKHIVLVLHHGSAVVRSTTVTCFAGI
TSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEIYEKFILAVE
ANTRDSLTSVRITASWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLTEDGDKVKSN
AVRALGSISKYVKLRCMTSIKSVDQDVLPFPHQQSSNSHHLSCAVDTRWLERTVQAFLSCVTTG
NVKVLDGCLRAISGFKGTEDLQYDRLMDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQW
SEAIRKHIVLVLHHGSAVVRSTTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRS
AACRAIGVISCFPETSLSAEIYEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSF
EGLKTTSQVVDALIECALRLTEDGDKVKSNAVRALGSISKYVKLRCMTSIKSVDQDVLPFPHQQ
SSNSHHLSCAVDTRWLERTVQAFLSCVTTGNVK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017