Detail information of AT4G38120_circ_g.3


General Information
CircRNA Name AT4G38120_circ_g.3
ID in PlantcircBase ath_circ_035309
Alias Ath_circ_FC3047
Organism Arabidpsis thaliana
Position chr4: 17890402-17891513  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G38120
Parent gene annotation ARM repeat superfamily protein
Parent gene strand -
Alternative splicing 4_circ_ag.2 AT4G37680_circ_g.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ig.7 AT4G37750_circ_g.1 AT4G37760_circ_g.1 AT4G37800_circ_g.1 AT4G37800_circ_g.2 AT4G37820_circ_g.1 AT4G37870_circ_g.1 AT4G37870_circ_g.2 AT4G37870_circ_g.3 AT4G37870_circ_g.4 AT4G37870_circ_g.5 AT4G37870_circ_g.6 AT4G37870_circ_g.7 AT4G37870_circ_g.8 AT4G37870_circ_g.9 AT4G37870_circ_g.10 AT4G37870_circ_g.11 AT4G37870_circ_g.12 AT4G37870_circ_g.13 AT4G37870_circ_g.14 AT4G37870_circ_g.15 AT4G37870_circ_g.16 AT4G37900_circ_g.1 AT4G37900_circ_g.2 AT4G37900_circ_g.3 AT4G37910_circ_g.1 AT4G37910_circ_g.2 AT4G37910_circ_g.3 AT4G37920_circ_g.1 AT4G37930_circ_g.1 AT4G37930_circ_g.2 AT4G37930_circ_g.3 AT4G37930_circ_g.4 AT4G37930_circ_g.5 AT4G37930_circ_g.6 AT4G37930_circ_g.7 AT4G37930_circ_g.8 AT4G37930_circ_g.9 AT4G37930_circ_g.10 AT4G37930_circ_g.11 AT4G37930_circ_g.12 AT4G37930_circ_g.13 AT4G37930_circ_g.14 AT4G37930_circ_g.15 AT4G37930_circ_g.16 AT4G37930_circ_g.17 AT4G37930_circ_g.18 AT4G37930_circ_g.19 AT4G37930_circ_g.20 AT4G37930_circ_g.21 AT4G37930_circ_g.22 AT4G37930_circ_g.23 AT4G37940_circ_g.1 AT4G37980_circ_g.1 AT4G37980_circ_g.2 AT4G37980_circ_g.3 AT4G37990_circ_g.1 AT4G38040_circ_g.1 AT4G38060_circ_g.1 AT4G38060_circ_g.2 AT4G38100_circ_g.1 AT4G38100_circ_g.2 AT4G38100_circ_g.3 AT4G38100_circ_g.4 AT4G38100_circ_g.5 AT4G38120_circ_g.1 AT4G38120_circ_g.2 AT4G38120_circ_g.4 AT4G38120_circ_g.5 AT4G38120_circ_g.6 AT4G38120_circ_g.7 AT4G38120_circ_g.8 AT4G38120_circ_g.9 AT4G38130_circ_g.1 AT4G38130_circ_g.2 AT4G38130_circ_g.3 AT4G38130_circ_g.4 AT4G38130_circ_g.5 AT4G38160_circ_g.1 AT4G38160_circ_g.2 AT4G38180_circ_g.1 AT4G38200_circ_g.1 AT4G38200_circ_g.2 AT4G38200_circ_g.3 AT4G38200_circ_g.4 AT4G38200_circ_g.5 AT4G38200_circ_g.6 AT4G38200_circ_g.7 AT4G38200_circ_g.8 AT4G38200_circ_g.9 AT4G38200_circ_g.10 AT4G38220_circ_g.1 AT4G38220_circ_g.2 AT4G38220_circ_g.3 AT4G38230_circ_g.1 AT4G38230_circ_g.2 AT4G38240_circ_g.1 AT4G38240_circ_g.2 AT4G38240_circ_g.3 AT4G38240_circ_g.4 AT4G38240_circ_g.5 AT4G38240_circ_g.6 AT4G38240_circ_g.7 AT4G38240_circ_g.8 AT4G38250_circ_g.1 AT4G38260_circ_g.1 AT4G38260_circ_g.2 AT4G38260_circ_g.3 AT4G38270_circ_g.1 AT4G38270_circ_g.2 AT4G38280_circ_g.1 AT4G38280_circ_g.2 4_circ_ag.3
Support reads 5
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G38120.3:6
AT4G38120.4:6
AT4G38120.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGCAGTCAGATGTAAATGGTGTATCCATTAATCTATCATACTGAAGATCTTCGGTTCCCTT
AAATCCAGATATTGCGCGAAGGCATCCATCCAAAACcttgtccccatcctcagttaggcgcaaa
gcacattctattagtgcatccacaacttgtgaagttgtcttcaatcctacttaggaggataaaa
gaaaagta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 645
Transcript exons: 17890402-17890475,17890548-17890626,17890723-17890786,17
890881-17890975,17891065-17891160,17891277-17891513
CTTGTCCCCATCCTCAGTTAGGCGCAAAGCACATTCTATTAGTGCATCCACAACTTGTGAAGTT
GTCTTCAATCCTTCAAAGGACCTATCATCAACGCGGTATCGCAGAGCATCGCATAGATTGGCCA
AAGCCCATGATGCTGTTATACGCACCGAGGTCAAGGAGTCCCGGGTATTCGCTTCAACAGCTAA
GATAAATTTTTCATATATCTCCGCACTTAAAGAAGTTTCTGGAAAACATGAAATAACACCAATC
GCTCGGCAAGCTGCTGATCTGACTGAAGGTGTTTTGTCATGCAATGCAGCGGTTATAATTGATG
AAGTAATAAAGTCCTTTTCCTGCTTATTGAAAGCGGAAAATATGGAGGATGTAATACCAGCAAA
GCAAGTAACTGTAGTGCTCCTCACCACTGCAGAACCATGGTGTAACACCAGAACTATATGTTTA
CGAATAGCCTCAGACCATTGGTCACATCCTGCCTGAAAGATTGGCTCTTGGGTATTATCAAATC
CATATGATGGTGCAGATGAGATTCTTATTGACCTTATGCAGTCAGATGTAAATGGTGTATCCAT
TAATCTATCATACTGAAGATCTTCGGTTCCCTTAAATCCAGATATTGCGCGAAGGCATCCATCC
AAAAC

Genomic sequence CTTGTCCCCATCCTCAGTTAGGCGCAAAGCACATTCTATTAGTGCATCCACAACTTGTGAAGTT
GTCTTCAATCCTACTTAGGAGGATAAAAGAAAAGTAAATCCAAACGTTGTATCAGGTCTAATCA
TAACGTCAGTACTAGTACCTTCAAAGGACCTATCATCAACGCGGTATCGCAGAGCATCGCATAG
ATTGGCCAAAGCCCATGATGCTGTTATACGCACCTGAATTGACAAAAATAAATCCCATTGCAGT
AGAACAATAAAATATAAAATGCATAGATCATGAGAACAAATAAATGAAAGTCAGTAATGCAATA
CCGAGGTCAAGGAGTCCCGGGTATTCGCTTCAACAGCTAAGATAAATTTTTCATATATCTCCGC
ACTGCATCCACAAAGTTCTTTAAGTTCTTGACCATGAATATCTTGTCAGGGTTGAGTTAGGACA
AGCAACAGACAGTGACAAAGGGTTAAGTTACCTTAAAGAAGTTTCTGGAAAACATGAAATAACA
CCAATCGCTCGGCAAGCTGCTGATCTGACTGAAGGTGTTTTGTCATGCAATGCAGCGGTTATCT
ACAAAAACTAAAAGACATTAGGCACCTACTGTAAAACTAAAGTCGAGATAGTAATACCAACAAT
CCTAAAAAGGCTTCAATACTTACAATTGATGAAGTAATAAAGTCCTTTTCCTGCTTATTGAAAG
CGGAAAATATGGAGGATGTAATACCAGCAAAGCAAGTAACTGTAGTGCTCCTCACCTTCCAAAC
ATAGGAAGAAATTCAGGACCGCGGATATTATGCAAACTACAGCAGCTACATCGATGATTGTACT
ATTAGTTGTACAAAAACATTAACTTGTAAAAAATTTAACCCACCACTGCAGAACCATGGTGTAA
CACCAGAACTATATGTTTACGAATAGCCTCAGACCATTGGTCACATCCTGCCTGAAAGATTGGC
TCTTGGGTATTATCAAATCCATATGATGGTGCAGATGAGATTCTTATTGACCTTATGCAGTCAG
ATGTAAATGGTGTATCCATTAATCTATCATACTGAAGATCTTCGGTTCCCTTAAATCCAGATAT
TGCGCGAAGGCATCCATCCAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.227249806
Functional Information
Coding potential Y
Potential coding position 17891445-17890404(-)
Potential amino acid sequence MDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQWSEAIRKHIVLVLHHGSAVVRSTTVTC
FAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEIYEKFI
LAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLTEDGDK
VLDGCLRAISGFKGTEDLQYDRLMDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQWSEA
IRKHIVLVLHHGSAVVRSTTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAAC
RAIGVISCFPETSLSAEIYEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFEGL
KTTSQVVDALIECALRLTEDGDKVLDGCLRAISGFKGTEDLQYDRLMDTPFTSDCIRSIRISSA
PSYGFDNTQEPIFQAGCDQWSEAIRKHIVLVLHHGSAVVRSTTVTCFAGITSSIFSAFNKQEKD
FITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEIYEKFILAVEANTRDSLTSVRITA
SWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLTEDGDKVLDGCLRAISGFKGTEDL
QYDRLMDTPFTSDCIRSIRISSAPSYGFDNTQEPIFQAGCDQWSEAIRKHIVLVLHHGSAVVRS
TTVTCFAGITSSIFSAFNKQEKDFITSSIITAALHDKTPSVRSAACRAIGVISCFPETSLSAEI
YEKFILAVEANTRDSLTSVRITASWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLT
EDGDK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a