Detail information of BGIOSGA017011_circ_ig.2


General Information
CircRNA Name BGIOSGA017011_circ_ig.2
ID in PlantcircBase osi_circ_014719
Alias Chr07:15762831_15765002(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28590556-28592729  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA017011_circ_ig.1 BGIOSGA017011_circ_ig.2 BGIOSGA017011_circ_ig.3 BGIOSGA014459_circ_igg.1 BGIOSGA014459_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTATTTTCCCAGTATACTGAGATCGTGTTCCTTTTATGGAGGAGTTCAGAACACATCTGGCA
GATGATGGCGTGCTGTACAAAACAAGAGAACGATGGatgggaagttccatcaccaagcatgatt
cagaaaatatattcctcttcttcaaaggagggtactgaccctcgatttttaaagctgaagcctg
tgtttagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGGAAGTTCCATCACCAAGCATGATTCAGAAAATATATTCCTCTTCTTCAAAGGAGGGTACT
GACCCTCGATTTTTAAAGCTGAAGCCTGTGTTTAGCTCTGCCAAAGTAAAGTGTGGGAACAAAC
AAAGGTATTGGACCTGTAGACTTCTTTTTTTTTTTTGCTAGTAGTAGCTCAAACTAGGTGGAAG
ATTTGGATATATTTCTTAATTCCTCAGCATGAACTTTAATTTTGAAGCCATTGCCTCTTTATAA
TGGTAAACAGCATTCCCTTGACAGTTGATTGGTCACCCTCTCATGATATGATATTGGCGGGATG
TCACGATGGAACGGTACCTTCTCCTTACCCAGCAAAATTATTTTCTTAACTTAAATCCTGTGAC
CTTTGAGTCTTTCAAGTTGCTGTTCTGAAAGTTCTGTGATTGACTTTCTTATATTCCAGGTTGC
TTTATGGAAGTTCTCTGCAAACTTGTCATTTCAAGGTATTTAGATAGTTTTGCCAACGACGTCA
CTCTTATCAGTTATCATTTACACTTTGCCTGACAACATGTCTGACTGTAGAACTGCTTTACTGG
TTTAAAAGCAAGTTACTGGAGTTCCCAAATCTTCACATTTCTTATTCTGTTCTGTTTGCAAACA
AAACTAAATCATGCGTTCTGTTGATAAACAGGTTCAAAACCTTTTATGTGTGTAACTGCTGAAT
CTGCTCCCATCAGAACCGTGTCGTGGGCACCATCTGTGAGGTAGCCAGTTGTACCGTTACTTCT
GGTCTATTCCAAAAGATAATTTTTGAGTTTTGACTCTTGTCATTCTATCAGTAAGGAAAACATG
AATACCTTTGTCACTGCTGGAGAGGATGGTCTGAAATTCTGGGATTTAAGGTAGGTGTTGGCCT
TGTTGTGAACTGAAGCAATGTTTAAAACATCTTTCGAACTACTCTCTTATCCTGCATGAATTTC
TAATATTATGTATGGGTCCTCAGAGGTCTGAACATTGAGGGTAGTCTCTCCCCCTTCCTCTCAA
TTTGTGGCACCTCCCAATTTCTGAACCATTCATACTAGTAATATGCCCGTGCTAAACGCTACGG
TGCAATTCTATTTAACTGTATCTTTAAAAAAATTTCATGTTACCAAAAAATATTTTTATATGAT
ATGTGCATTTGAACTTTAATTAAATTCATATAGTACATTAAATATATTTCATGTAAGGTGCAGT
ACTATGATATTACGTGGGCACAGTAAAACTTTACAAGACTTAATTATATATAATATACCCTATG
TACACAATATAAAAGGCAATATACGCATAAAAATATGTTAGAAAAGTATAGAGTTATTCCATTA
TTTGTTGCGGGCAGAAAAATATGTTAGAGAAGTATAGAGTTCTTCCATTATTTAAATAAAGCAT
TTGTTATGTATAGAATACACCTCATAGGTAAAGAATAACTATTCTAATGCTTTGCATTTGCGAT
ACAGTGAAGAAAATCTCGTGCGCCGCTAGGAATGTTGCTTGCGCACTCATTTCCAACCGGACCG
AATTCAGCCCAACCCAGCCAACTATTCACTTTAGAAGCGTGTGGTAGAGACTGAAGAAAAAGAA
AATAATTCTACTTTCGTTTATAATATTTTTTTCACTATCTTTTCAGATCACTACTTGTAGATAT
ATTTTTTATACTTATTAGGGTAATGCATTTAGATACATGTAGTTATATAAATTATCGTGCACAT
ATATTTTTTAATGGAATGAAGTATGAGTTTTTTATTTCATTGTGACACATTTCATTTCTCAACG
GTTATGATATAAAATATTTATTCATCTCATGTGCATCCTTTTTTTGAGTGTCATGCGTATGGTT
ATATCTATGGACGGCATTATCATGCCTGCCCATTGTTGATATTTTATACAGTATATACATCCTG
TATTTCTATTATACCGTGAAAGAAATAAATATATATTCATTTAAGTTGTATGGATGAACCATAT
AGAAGATATAGAAAAAAATTAATAAGCATTCATCCATCAATGATAGTTTAAGTTTTGTCTATAT
TTTTCCTTTATATCTACTCGGCTTCAAATTATTTTCCCAGTATACTGAGATCGTGTTCCTTTTA
TGGAGGAGTTCAGAACACATCTGGCAGATGATGGCGTGCTGTACAAAACAAGAGAACGATGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021