Detail information of Os01g0510100_circ_g.4


General Information
CircRNA Name Os01g0510100_circ_g.4
ID in PlantcircBase osa_circ_001889
Alias Os_ciR3499
Organism Oryza sativa
Position chr1: 17905649-17907588  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0510100
Parent gene annotation MAP kinase kinase 1. (Os01t0510100-01)
Parent gene strand +
Alternative splicing Os01g0510100_circ_g.2 Os01g0510100_circ_g.3 Os01g0510100_circ_g.5 Os01g0510100_circ_g.6
Support reads 2/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0510100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGCTTCTACGAATTATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCA
GTTCTCTCCAGAATTTTGTGCATTTATCTCCTCCTGgaccgcgagtggtacattcaaggatggt
gaactgcggcttaatcaaagaggtttgcagcttatatccgaggaaactgcagatgaacctgtga
gttcctgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 855
Transcript exons: 17905649-17905736,17906086-17906223,17906711-17906935,17
907067-17907249,17907368-17907588
GACCGCGAGTGGTACATTCAAGGATGGTGAACTGCGGCTTAATCAAAGAGGTTTGCAGCTTATA
TCCGAGGAAACTGCAGATGAACCTCAGTCAACAAACCTGAAGGTGGAAGATGTTCAGTTGTCAA
TGGATGACCTTGAGATGATTCAAGTCATTGGTAAGGGGAGTGGTGGTATCGTCCAACTAGTTCG
GCACAAGTGGGTGGGGACATTATATGCCTTGAAGGGCATACAAATGAACATTCAAGAGGCAGTT
CGCAAACAAATAGTACAAGAGCTCAAAATAAATCAAGCAACACAGAACGCACATATAGTCCTTT
GCCACCAATCTTTCTACCATAATGGTGTAATATATCTTGTTCTAGAATACATGGACCGTGGATC
TCTTGCAGATATCATTAAACAAGTCAAAACAATTCTGGAGCCATACCTGGCAGTACTTTGCAAA
CAGGTTTTGGAGGGTCTACTGTATCTTCATCATGAAAGGCATGTGATTCACAGGGATATAAAGC
CATCTAACTTGTTAGTTAACCGTAAAGGTGAAGTAAAGATTACCGATTTTGGGGTAAGTGCGGT
GCTAGCAAGTTCAATGGGTCAGCGGGATACGTTTGTTGGAACCTACAACTATATGGCGCCTGAG
CGTATTAGTGGAAGCTCCTATGACTACAAGAGTGACATATGGAGTTTGGGCTTAGTAATACTCG
AGTGTGCCATTGGTCGGTTCCCCTATATACCTTCAGAAGGGGAAGGTTGGTTAAGCTTCTACGA
ATTATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCAGTTCTCTCCAGAA
TTTTGTGCATTTATCTCCTCCTG

Genomic sequence GACCGCGAGTGGTACATTCAAGGATGGTGAACTGCGGCTTAATCAAAGAGGTTTGCAGCTTATA
TCCGAGGAAACTGCAGATGAACCTGTGAGTTCCTGGTGCCATGGCTACTTTTTTTGTTTGTTCA
TATCTCCCTACTGGGTTCATGTAAACTGCTTTATCGTACTCCTTATGGTGACATGTAGGTTAGT
GTAGAAGCACATGTACAGGTTGACTAGTTCAGTCAAACCTTATCATGCTTCTGTTGATTTTCAT
TTGGCTGATTGAATGCAATACTCACTTGCAATGCATGGGATCCATGCCACTCATGCATTCTCGC
AATGTATTATGTGCTGCAATAGTGCTAAGGAATCATTGTGTAAACATTTCAGAGTTTATCCATG
GATATAACATTGTTCACATTTCTCAATTTCTGTTTCATCTTTATGTCTTCCAGCAGTCAACAAA
CCTGAAGGTGGAAGATGTTCAGTTGTCAATGGATGACCTTGAGATGATTCAAGTCATTGGTAAG
GGGAGTGGTGGTATCGTCCAACTAGTTCGGCACAAGTGGGTGGGGACATTATATGCCTTGAAGG
TAATTTCCATTACACAAAATCCATCTAGTGTTCCACACTAATTCTTAAATGGAAAATGTATATC
TTGTGGCTGCATCAGGCTGCGAGTCCTTCAGTTGAACTGTTTCTCTATCTTTATGTTTGTAATC
ATGGAAAGCTGGAAGTCAATCTCTCAGTTCCATTTTGAACATGTTTATCATAATCAGATTATTC
TGCATCATAGCATTTGATTGATTTTTTAATCAATTTGGTAGTGTTGGCACCTATTAGTATGTTC
CCTGTTGAAATTAGGTGGGGCATTCTACATAAATGGTGTAGCAGAAGCATCTGTCGTCAGCTTA
CGTGTTGCATGCAATATCTACATTGAACTCTGATTTTCAATTAATATTGATGCTAATGAAGAAC
ATCATGTTATGATGTTCAGATCAATCAAGAATTCTGTGCATTGTCCCTGGTATTCATACTGCTG
TGGCATTTAATTAACTAGCATTGCAATTCTGTCCACAGGGCATACAAATGAACATTCAAGAGGC
AGTTCGCAAACAAATAGTACAAGAGCTCAAAATAAATCAAGCAACACAGAACGCACATATAGTC
CTTTGCCACCAATCTTTCTACCATAATGGTGTAATATATCTTGTTCTAGAATACATGGACCGTG
GATCTCTTGCAGATATCATTAAACAAGTCAAAACAATTCTGGAGCCATACCTGGCAGTACTTTG
CAAACAGGTTAGCATAAACTTAGCCTTTTATTTCTAACTTTCCCTGTTTTCGGAATAAGCTTGG
AATTTTGTCGCATCTATCCAGTTGAAAAAGTATTCTAACGTAAAAAAACATTGCATGATATTTT
GACAACTCAGGTTTTGGAGGGTCTACTGTATCTTCATCATGAAAGGCATGTGATTCACAGGGAT
ATAAAGCCATCTAACTTGTTAGTTAACCGTAAAGGTGAAGTAAAGATTACCGATTTTGGGGTAA
GTGCGGTGCTAGCAAGTTCAATGGGTCAGCGGGATACGTTTGTTGGAACCTACAACTATATGGC
GGTATGTTGAAATAATGACCTGCTTTATTTATGTACCCCTTAGTCTATGTTCAAGACAGTGATC
TGATCTGGAATTCATAAATTTGTTCTCATAGTTTCTACCTTTCTTCCTAGTTCAGCCTGAGCGT
ATTAGTGGAAGCTCCTATGACTACAAGAGTGACATATGGAGTTTGGGCTTAGTAATACTCGAGT
GTGCCATTGGTCGGTTCCCCTATATACCTTCAGAAGGGGAAGGTTGGTTAAGCTTCTACGAATT
ATTAGAAGCAATTGTTGACCAGCCACCACCCTCTGCACCAGCGGACCAGTTCTCTCCAGAATTT
TGTGCATTTATCTCCTCCTG
Conservation Information
Conserved circRNAs osi_circ_002101* osi_circ_009620
PMCS 0.171055799
Functional Information
Coding potential Y
Potential coding position 17906126-17907585(+)
Potential amino acid sequence MDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNAHIVL
CHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIK
PSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVIL
ECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRL
NQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGI
QMNIQEAVRKQIVQELKINQATQNAHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILE
PYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVG
TYNYMAPERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSA
PADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQLISEETADEPQSTNLKVEDVQLSMDDLEM
IQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNAHIVLCHQSFY
HNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIHRDIKPSNLLV
NRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSSYDYKSDIWSLGLVILECAIGR
FPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAFISSWTASGTFKDGELRLNQRGLQ
LISEETADEPQSTNLKVEDVQLSMDDLEMIQVIGKGSGGIVQLVRHKWVGTLYALKGIQMNIQE
AVRKQIVQELKINQATQNAHIVLCHQSFYHNGVIYLVLEYMDRGSLADIIKQVKTILEPYLAVL
CKQVLEGLLYLHHERHVIHRDIKPSNLLVNRKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMA
PERISGSSYDYKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFS
PEFCAFISS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017