Detail information of Os03g0837100_circ_g.3


General Information
CircRNA Name Os03g0837100_circ_g.3
ID in PlantcircBase osa_circ_022621
Alias NA
Organism Oryza sativa
Position chr3: 35179043-35179400  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0837100
Parent gene annotation Similar to Cellulose synthase-6. (Os03t0837100-01);Similar to cD
NA clone:J023086F23, full insert sequence. (Os03t0837100-02);Sim
ilar to cDNA clone:J023086F23, full insert sequence. (Os03t08371
00-03)
Parent gene strand +
Alternative splicing Os03g0837100_circ_g.1 Os03g0837100_circ_g.2 Os03g0837100_circ_g.4 Os03g0837100_circ_g.5 Os03g0837100_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AC-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAAATTTGTGGTGGTTGCTACTGCTAGTAATAATTTCTATCCGGTATTTCCTTAAGTAGACA
TGTGTTGCCCTGTTGCTATATGTGTTTAGAGACTCAgtatgacactggaaactcgtttgacttt
taatttgtttggtgcttctctgataggctatttttggtgtccttgcattggtcaaaccttaaat
tgggcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 358
Transcript exons: 35179043-35179400
GTATGACACTGGAAACTCGTTTGACTTTTAATTTGTTTGGTGCTTCTCTGATAGGCTATTTTTG
GTGTCCTTGCATTGGTCAAACCTTAAATTGGGCATGATTATGACCGAATAACGACAGAAAATCC
AATAAACTGTGTCAGTGTGATAGAATTTGGAATCATACTGGCTGCTTCAAATTAGTCACATAGT
TCAACCATCATGTATGTTTTGCTGGATGAAGGGAATCTCATCATCAGCCATTTTAGTATGTGGC
CTAGAAAATTTGTGGTGGTTGCTACTGCTAGTAATAATTTCTATCCGGTATTTCCTTAAGTAGA
CATGTGTTGCCCTGTTGCTATATGTGTTTAGAGACTCA

Genomic sequence GTATGACACTGGAAACTCGTTTGACTTTTAATTTGTTTGGTGCTTCTCTGATAGGCTATTTTTG
GTGTCCTTGCATTGGTCAAACCTTAAATTGGGCATGATTATGACCGAATAACGACAGAAAATCC
AATAAACTGTGTCAGTGTGATAGAATTTGGAATCATACTGGCTGCTTCAAATTAGTCACATAGT
TCAACCATCATGTATGTTTTGCTGGATGAAGGGAATCTCATCATCAGCCATTTTAGTATGTGGC
CTAGAAAATTTGTGGTGGTTGCTACTGCTAGTAATAATTTCTATCCGGTATTTCCTTAAGTAGA
CATGTGTTGCCCTGTTGCTATATGTGTTTAGAGACTCA
Conservation Information
Conserved circRNAs osi_circ_013865
PMCS 0.214859963
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017