Detail information of Os03g0246500_circ_g.8


General Information
CircRNA Name Os03g0246500_circ_g.8
ID in PlantcircBase osa_circ_018841
Alias Os_ciR9162
Organism Oryza sativa
Position chr3: 7745526-7745630  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0246500
Parent gene annotation Protein of unknown function DUF869, plant family protein. (Os03t
0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non
-protein coding transcript. (Os03t0246500-03)
Parent gene strand +
Alternative splicing Os03g0246500_circ_g.5 Os03g0246500_circ_g.6 Os03g0246500_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0246500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCGAAAGAAGTTACCAGGGCCTGCTGCATTAGCTCAAATGAAAATGGAAgatgtaaagaaa
atatcaaaactggaagctgaatgccaaagattacggggtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGTAAAGAAAATATCAAAACTGGAAGCTGAATGCCAAAGATTACGGGGTCTTGTTCGAAAGA
AGTTACCAGGGCCTGCTGCATTAGCTCAAATGAAAATGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.354924444
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015