Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0246500_circ_g.5 |
ID in PlantcircBase | osa_circ_018838 |
Alias | Os_ciR2290 |
Organism | Oryza sativa |
Position | chr3: 7745017-7747534 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os03g0246500 |
Parent gene annotation |
Protein of unknown function DUF869, plant family protein. (Os03t 0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non -protein coding transcript. (Os03t0246500-03) |
Parent gene strand | + |
Alternative splicing | Os03g0246500_circ_g.6 Os03g0246500_circ_g.7 Os03g0246500_circ_g.8 |
Support reads | 5/1 |
Tissues | root/shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0246500-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014130 |
PMCS | 0.40442129 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7747477-7745029(+) 7745137-7745049(+) |
Potential amino acid sequence |
MRTRGIQCVWMRMQIPKQSRLGES*(+) MKQVRTVKEEGEQKLHDVVFAKTKQWEKIKAEFEAKLLEFEQELIRAGAENDALSRSLEERGDL LMKIDEEKARAEAEIEVLKNTIQSGEREINSLKYEIHVVSKELEIRNEEKNMSVRSADVATKQH MEDVKKISKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGESRLRRSPAKNSSFHRPM SPMSPVPDYAFENLQHMQKENEFLTARLLSMEDETKMLKEALAKRNSELQTSRNMYAKTAGKLR GLEVQMLTGSQRKSTSNPNMDIHFDGALSQNGSNPPSMTSMSEDGVDDEGSCTESWANALVSEL SHIKKEKGAKSSVTEGSNRLELMDDFLEMEKLACLSSEANGHVSTVEKMKIDDTEASLSGITER DGVKDSQSVLALPGTPSNKLQLSDSSPLLKLQSRISSLLDSESPQNNAGNILDSIRNILKDIED EADSSNDSKTHHGDMVEVADNGSLMKHSSSGSKHAMDQELVNAILKIQDFVKSLDQEVSKFQGQ SSDCDGLCDKIQQFSALVEKALSNENVLNDIVMTLSLILSGTSEIKFMMLKENTKEADNNNLDY VDKVTLLENKVQLEPLKDSISGPCLPRSSSDPEIEGPTDSGCDVKTAVQICSSEEFEQLKSEKL NLEAELSKCNEVIEETKFRFKELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAE LENEIKVLQSKIEVLTAELDDERQNHQEDITRYRDLEEKIERYENERNSMCVDEDADTKAKQVG RKLKRRPQH*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |