Detail information of Os03g0246500_circ_g.5


General Information
CircRNA Name Os03g0246500_circ_g.5
ID in PlantcircBase osa_circ_018838
Alias Os_ciR2290
Organism Oryza sativa
Position chr3: 7745017-7747534  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0246500
Parent gene annotation Protein of unknown function DUF869, plant family protein. (Os03t
0246500-01);Non-protein coding transcript. (Os03t0246500-02);Non
-protein coding transcript. (Os03t0246500-03)
Parent gene strand +
Alternative splicing Os03g0246500_circ_g.6 Os03g0246500_circ_g.7 Os03g0246500_circ_g.8
Support reads 5/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0246500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTAGGTTTTTCTTCTTACTTAATCCATTGACATGAAGGTATGAGAACGAGAGGAATTCAATG
TGTGTGGATGAGGATGCAGATACCAAAGCAAAGCAGgttgggagaaagctgaagcggaggcctc
agcactgaagcttcagctagaaactgttacattggctaagctagcggctgaggaaagagctgcc
catctgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGGAGAAAGCTGAAGCGGAGGCCTCAGCACTGAAGCTTCAGCTAGAAACTGTTACATTGGC
TAAGCTAGCGGCTGAGGAAAGAGCTGCCCATCTGGATGGTGCTCTGAAAGAATGCATGAAGCAA
GTAAGGACTGTGAAAGAAGAAGGTGAGCAGAAGCTACATGATGTAGTCTTTGCAAAAACCAAAC
AGTGGGAGAAGATAAAGGCCGAGTTTGAAGCAAAGTTACTTGAGTTTGAACAGGAGCTCATTAG
GGCTGGTGCTGAGAATGATGCACTCTCAAGGTCACTCGAGGAACGGGGAGACCTTTTGATGAAG
ATTGATGAGGAAAAGGCTCGAGCAGAGGCTGAAATCGAAGTCTTGAAAAACACAATTCAGTCAG
GTGAAAGGGAAATTAATTCACTGAAATATGAAATTCATGTTGTTTCCAAAGAGCTTGAAATCCG
CAATGAGGAAAAGAACATGAGTGTGCGCTCAGCTGATGTTGCAACTAAACAGCACATGGAGGAT
GTAAAGAAAATATCAAAACTGGAAGCTGAATGCCAAAGATTACGGGGTCTTGTTCGAAAGAAGT
TACCAGGGCCTGCTGCATTAGCTCAAATGAAAATGGAAGTGGAGAGCTTGGGCAGAGATTATGG
AGAAAGCAGGTTGCGACGATCGCCTGCAAAGAATTCCAGCTTCCATCGTCCTATGTCCCCTATG
TCCCCTGTTCCTGATTATGCATTTGAAAACTTACAGCACATGCAGAAAGAGAATGAGTTTCTGA
CTGCACGTTTGTTATCCATGGAAGATGAAACCAAAATGCTAAAAGAGGCCTTGGCCAAAAGGAA
TAGTGAGCTGCAAACATCAAGAAACATGTATGCTAAGACAGCAGGCAAACTCCGTGGCTTGGAA
GTTCAAATGTTGACTGGTAGCCAACGTAAGAGTACTTCGAATCCCAACATGGATATCCACTTTG
ATGGTGCACTGAGTCAAAATGGAAGCAACCCACCTAGTATGACCTCCATGTCTGAAGATGGTGT
TGATGATGAAGGAAGTTGCACTGAATCTTGGGCCAATGCTCTGGTCTCTGAGCTCTCACACATC
AAGAAAGAGAAAGGAGCTAAGAGCAGTGTGACAGAAGGCTCCAATCGGTTGGAACTCATGGATG
ACTTCCTAGAGATGGAGAAACTAGCCTGTTTGTCATCTGAAGCAAATGGACATGTCAGTACTGT
TGAAAAAATGAAGATTGATGATACGGAAGCTTCTTTGTCTGGTATTACTGAAAGAGATGGTGTT
AAAGATTCGCAGTCAGTTTTGGCATTGCCAGGGACTCCATCTAATAAACTGCAGCTGTCTGACA
GCTCTCCACTCTTGAAACTACAGTCTAGAATATCTTCCTTGCTTGATTCTGAATCACCACAGAA
CAATGCTGGAAATATACTAGATAGTATCAGAAATATTCTAAAGGATATTGAAGATGAGGCAGAT
TCATCAAATGATAGCAAGACTCATCATGGTGACATGGTTGAAGTAGCTGACAATGGATCACTAA
TGAAGCATTCAAGCAGCGGGAGCAAGCATGCTATGGATCAAGAACTAGTCAATGCCATTTTAAA
GATTCAAGACTTCGTTAAGTCACTTGACCAAGAAGTGTCCAAGTTCCAAGGGCAGTCTTCAGAT
TGTGATGGTTTATGTGACAAAATACAGCAGTTCTCTGCACTAGTAGAGAAAGCTCTATCAAATG
AGAATGTTCTAAATGACATTGTTATGACGCTGTCTCTTATCTTGTCAGGAACCAGTGAGATTAA
GTTCATGATGTTGAAAGAGAACACCAAAGAAGCTGACAATAATAATTTGGATTATGTTGATAAA
GTGACTTTACTTGAAAATAAAGTGCAGCTTGAGCCACTAAAGGACAGCATTTCTGGTCCTTGCC
TTCCTCGTTCATCTTCTGATCCGGAGATTGAAGGTCCTACTGACTCTGGATGTGATGTCAAGAC
TGCTGTGCAGATATGCTCATCAGAGGAATTCGAGCAACTTAAATCTGAGAAGTTGAATTTGGAG
GCAGAATTATCAAAGTGCAATGAAGTTATAGAAGAGACAAAATTTAGGTTTAAGGAGTTGGAGA
AGAGCCTTGAAGAGTTGACATCCAAGTTGGTTGCCAGTGAGAAATCAAACAGCTTGGCTGAGAC
ACAGTTGAAGTGTATGGCTGAATCCTACAAGTCACTTGAGTCAAGGAAAGCTGAATTAGAAAAC
GAAATAAAAGTGCTGCAGTCCAAAATAGAAGTTTTGACAGCTGAACTTGATGATGAAAGACAAA
ATCATCAGGAGGATATAACAAGATATAGAGATCTCGAGGAGAAGATTGAAAGGTGAAACTGAAA
ATTTTTTTTTATTATTGATTAATAGTTGGTACAAAGATATCACTGCCCTCTGCTAGGTTTTTCT
TCTTACTTAATCCATTGACATGAAGGTATGAGAACGAGAGGAATTCAATGTGTGTGGATGAGGA
TGCAGATACCAAAGCAAAGCAG
Conservation Information
Conserved circRNAs osi_circ_014130
PMCS 0.40442129
Functional Information
Coding potential Y
Potential coding position 7747477-7745029(+)
7745137-7745049(+)
Potential amino acid sequence MRTRGIQCVWMRMQIPKQSRLGES*(+)
MKQVRTVKEEGEQKLHDVVFAKTKQWEKIKAEFEAKLLEFEQELIRAGAENDALSRSLEERGDL
LMKIDEEKARAEAEIEVLKNTIQSGEREINSLKYEIHVVSKELEIRNEEKNMSVRSADVATKQH
MEDVKKISKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGESRLRRSPAKNSSFHRPM
SPMSPVPDYAFENLQHMQKENEFLTARLLSMEDETKMLKEALAKRNSELQTSRNMYAKTAGKLR
GLEVQMLTGSQRKSTSNPNMDIHFDGALSQNGSNPPSMTSMSEDGVDDEGSCTESWANALVSEL
SHIKKEKGAKSSVTEGSNRLELMDDFLEMEKLACLSSEANGHVSTVEKMKIDDTEASLSGITER
DGVKDSQSVLALPGTPSNKLQLSDSSPLLKLQSRISSLLDSESPQNNAGNILDSIRNILKDIED
EADSSNDSKTHHGDMVEVADNGSLMKHSSSGSKHAMDQELVNAILKIQDFVKSLDQEVSKFQGQ
SSDCDGLCDKIQQFSALVEKALSNENVLNDIVMTLSLILSGTSEIKFMMLKENTKEADNNNLDY
VDKVTLLENKVQLEPLKDSISGPCLPRSSSDPEIEGPTDSGCDVKTAVQICSSEEFEQLKSEKL
NLEAELSKCNEVIEETKFRFKELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAE
LENEIKVLQSKIEVLTAELDDERQNHQEDITRYRDLEEKIERYENERNSMCVDEDADTKAKQVG
RKLKRRPQH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017