Detail information of Os12g0263200_circ_ag.6


General Information
CircRNA Name Os12g0263200_circ_ag.6
ID in PlantcircBase osa_circ_011032
Alias Os_ciR7605
Organism Oryza sativa
Position chr12: 9283147-9287528  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0263200_circ_g.1 Os12g0263200_circ_g.2 Os12g0263200_circ_ag.1 Os12g0263200_circ_ag.2 Os12g0263200_circ_ag.3 Os12g0263200_circ_ag.4 Os12g0263200_circ_ag.5 Os12g0263200_circ_ag.7 Os12g0263200_circ_ag.8 Os12g0263600_circ_ag.1 Os12g0263600_circ_ag.2 Os12g0263600_circ_ag.3 Os12g0263600_circ_ag.4 Os12g0263600_circ_ag.5 Os12g0263800_circ_g.1 Os12g0263800_circ_g.2 Os12g0263800_circ_g.3 Os12g0263800_circ_g.4 Os12g0263800_circ_g.5 Os12g0263800_circ_g.6 Os12g0263800_circ_g.7 Os12g0263800_circ_g.8 Os12g0263800_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCTGTGGTCTTATGTATATTGTCTTGTTCAAGGTGCGAGGATCATCGATTGATTTGATTG
TATATGTTCCCACATCATCTTCATCCACAAAAAACActtgacatttccagcttctttgatggcc
tcgacaagcttgagctggagcatgaggttgtggctgcggaggtggacgccggacatggcggaga
cgacgacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGACATTTCCAGCTTCTTTGATGGCCTCGACAAGCTTGAGCTGGAGCATGAGGTTGTGGCTG
CGGAGGTGGACGCCGGACATGGCGGAGACGACGACGTCCACCTGCCGGACCGCGGCGACGAGGC
CATCGTGGTCGTCGAGCGACGCCTCGAGGAGCCGCGCGCCTTGCGCCTTGAAGGCCAGCAGTAT
CTGGAGCTTGTCGATGTCGAGGCCGATCTCCGGCCGGAGCAGGACGAAGGTGGGGTGGCCCTCC
GCCAAGCTCGCCGCCACGATCCGCCGGCCGATGTAGCCGGTGCCGCCGACGATGAGGACCCGGC
TCTTCTCCATGGCCATGTATGGCTCTGCTCGATCTGATGAGTCACACAACGGACGACGCTATCG
TGCACTTCACAAAGCTTACTGCGATTTGTGGCCTATATGAACGAGCGCGTCGTCCTGTTCTACT
GTTGTCGTACCAAGGGTCTCAATCGTACTCCAATAAATAATCACTGTTGACTGGGTAAGGGCTA
CTTCTCGGTAAAAAGAAACAAAATATAAGTAGTACTGAACATGACATTGATATATCTCAGTAGA
ACAAATCTGCACAGACGATATGTCACATCCAGGACGATATGTCACATCCAGTTTCTAGCATCGT
TGTTTGAGATGGAGGGAGTAGGTAAAGAACAATGTTTGATACATCATCTTTTCGCTTATGTTTA
TACTTATCAGCCAAAATTTGAATTTTGAACCTAAAATTTGGAGTTGATTTTGGTGTTTTTTAAT
ATTTTTCAGTCTTTGCTTTTAGATCGCTAAGAACACGTATATAAAAGTTTTATTCACAAATTAT
TTTTTATTTGTGAATATGCTGGGGCCGTTGGATTTGCATGGCCGATGAGGCTCTTTTAACTTAT
ATAAGATAAAAGTGTGTCTATGTGAGAGTATCACTAACTACATCCTAAAATTTTATCCCCAAAC
TTTTAGTTTTGCGAATCCTAAACAAAATTTGAAGTGTTAAAATTTTCATTCCTCCAAAAGATTA
GCTAAAATAGGCTTCCTAAATATTAAAAGGTGGGCCCCTAGGAAACTTCCAACCCCACCCTCCC
GCGAGATCATGTTCGCCCGCTCGACCCTGCCCTCACCGCTCGGTCATCTCTAGATCTGTAATCA
CTTGCTTTCTCACTGATTGGCAGAGCCAATGGCTGGCCTGAAAACTCTGTTTCTTTTGCCACAA
CAATTTGTTACATAACTTTCTTTATTATCTACTGAATTTTCCCCTAATTGCCCTAAATACTAAC
ATCAGAGAACAAACTAAATTGTTGCTTTGCAGTAATAGAATTTGAATTACCTCATCTTTTAATA
GTTCCTCCTAAACACAATCGCTAAGAAACTCGAAGAGACAAGCTTTTCATTCTCAATTTAATAT
AACAGAAAGAGGACCAAGAACCGTAATAGCTATATCTAGCTAGATGCACCCAACAAAATTTGCC
ACACAAACAAATCTGAAAACTACAATCATCATTAGTCACTGGATGGTGAAGATGTCCTTTGCTT
TTTCTTTACACATTTACAGAGCTTGGATGAATCATGTTCTGTAAAAGATGTTGATCAAAGGCCT
TTGGTCGCCCATATCAATGGGATCACACGCATTGCTAAAACTATCTTCAACACAAAGAGCTTCT
ATCGAATAAGTGTTGTAACTACAAAAGTAAATGCAAAATTTGCTACAGGACACTCAAAGATTGT
GGCATTTGCTGTGAGACACCCAAAAATTGTGTATTTGCTTGTGGACACTGTAAAAATATGGTAA
TTAGCTGCTGGACACTCGAGGCATTATTTTATTATTTTCGGTGAAAACAGAGAGAGAAAGAGTG
TTGAAAGTACCAAAATGCCCCTGACACTGTTCTTCTTTCTTCTCTCTTTCCTGCCCCTGACACG
GGTCGCGTTCTTCGCTGCAGGTGGCGGCGCCATGCGGGAGGTGCTGCTCACGCGGTGGGAGGGG
CGGGACGACCAGGTGCTGCTGTACGGTCTCCTCCCGGCAGGGGTGGACCACGGCGAGCTCATGG
GCAGAGCGCGGTTCTGCCTGTGCCCGACCGGTGACGACGAGGGCGCGGCCGCGGCGAGCCGCCG
CGTCGTGGAGGCCATCACGGTGGGTTGCTGCGCTGTGGACAGCGCCGTCTCCTTCCTGCGCCGC
CGTCACCGGTGAGCTCCAAGGCCAAAGCCTTCTTCCCCTCGCGCCACTGCCTCTCTCTCTCTTC
CCCAATTCCGGCCAATGCCGTCCGTTGCCGCAGCGCCACCTCCACGCCATCACAGAGCCCCGTG
CCGTGCCACCGGGTTCGCCTCCATCTCCTCTTGCCGACGCCGACGCTCGTCGCAGCAGCCATGC
GCTGTCACCGACGAACGCCGCCGCGCCGCCGCCATGGCAGAGCACGGCCAGGGAGCCATGGCTG
CTCTGCCTTGGAGCCATGGCCGGACCTGGTCGGCTTATACAAATGGCCCACGGGCAAAATTGTC
TTTTATGAAAGTTTCTCTCACCGTTTCAGCCGGAAATAATAAAATAATGGGAGGAGTGTCCACC
AGCAAATTACCACATTTTTTCGGTGTCCAAGAGCAAATACACGATCTTCGGGTGTCTCACAGCA
AAGACCACAATCTTTAAGTGTCCTGTAGCAAATTTTGCTAAAAGTAAATTACCTCAGCTTTGTC
TAAGCTTCCAAGCCTCTTCCCAGTTGTTAGATTAGTTATGACTACAGACACCCGTGCGGCGGGA
GGGGCGGTGGCTGACGGCCCATGCGGCGGGAGGGCAGTGGCCGGTGACACCCACGCGGCGGGGC
GACGCCCGCGCAGCGGGAGTGCGGTGGCCGGCGCCACTGCACGGCGTGACGAAGGCTGGACGAC
GGCGCGTGGCCGGAGGGCGGCAGGATGGCGCGTTCGGTCGGAGGACGGTGGGACGATGGCTCGC
GCGGCAGGAGGGCGGCGGGATGCCGGCGCGGGACTGCAGGCCGGTGGCGCGCAGAGGCTGCTCG
CGTGGAGAGGATGCGGGAGAAGGAAAGGGGATTGAAACTTTAGTTAGGATTGGCATGGGCATTT
TGGTATTTTCTAAAAATACTAACAATACAACACACGGTTTGAGTAACATATCTAACGGAAACCT
ATCGGGAGGGGCATGGAAGGGATCAAAGCGAAATTTCAGGGGTACACAGGGGATTGGGTAAAAT
TCGAGGGTATAGAAGGCATTAGGTGAGTTTTTATGGTACACAAGGGATTTTCTCTACATTATTT
GTCTGACATTGTACTTAAATAGTTTGATTATACATTAGAGATGGACAACGGCTAAGGGTAACCA
TACTTCAGGCCCCGTTCACAACACACGAAAAAAAACATTTCAACATTACACAAACTGTACAGAT
ATACTCGAGTGAATATTTCATGCCATTTTCACGGTCTGCACGATTCACATATAGTATCTTTGTA
CCCCCTATAGCATTGTCGAAGTTGCGTATCACAGAAATATGAGAAAATTCAATAATGTTCGCAA
AAAAGTCTGAACATGAACATGATAATTAACTCATTTGAACTTTCCACGTACCTGATCAACTTGA
TAGTAATTAGTAAAACAGAGTATATTCGAGCTGGGTTGTGAACAGTACAAATACCATATATTCA
AACAAGCATGGTGTTATTGAATTCTCATATCTAGAGAGAATTTGACTTAGTGAAGCAAGCTGCC
AAACCGTAAACCAACATGAATATTTATAAAATTTTCATATACTCCGTTACAGATAGCGTTTTAT
AACTTCATTAATGCGGGTGTACTGAACATCTGGGTAGAGCAGAGTTGCTTCGGCTCCATTGTCA
CCAATGTCGAAGTTTGTTAAGCAACCTTCGTAGAAAATGTGGTAGAAATGTGTTACTCCCACTT
GATGAGCAAAATCTGTATCTGCTTGCATAAAAAATTGCATATCAATGATAAGTTAGGTTAATCA
TTGTTTGAAATTTAACCCCTTGAGTAATGATATTAAAAAAGGAACATAGCCAAAAGTGTACATT
ATCAATTTGGTAATCAACCGAAAACAATATGATTGGTGTGGTGCTGAAGTTGCAGGTGTTCTAC
TCCAGCCATCAAGAGTACTTAAATTAAGTCTTGGTGTTCATGATTAAATAAATATATATATCGA
TAAGCAGTTTATTTTTACCTTTCATTGAAGCCAAAAATTCATCACCGTGTATGTGGAATTTGGT
AAGACTTTTTCCAGAGAGTTTTTCCCACATCGCGATCAGCTCGTTCTGAGTGAGGCAATTATCC
TGTGGTCTTATGTATATTGTCTTGTTCAAGGTGCGAGGATCATCGATTGATTTGATTGTATATG
TTCCCACATCATCTTCATCCACAAAAAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.681745002
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015