Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d016804_circ_g.2 |
ID in PlantcircBase | zma_circ_008716 |
Alias | zma_circ_0001922 |
Organism | Zea mays |
Position | chr5: 176683008-176683680 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016804 |
Parent gene annotation |
histone methyltransferases(H3-K4 specific);histone methyltransfe rases(H3-K36 specific) |
Parent gene strand | + |
Alternative splicing | Zm00001d016804_circ_g.1 Zm00001d016804_circ_g.3 Zm00001d016804_circ_g.4 Zm00001d016804_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d016804_T002:1 Zm00001d016804_T001:1 Zm00001d016804_T003:2 Zm00001d016804_T004:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.073157615 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
176683174-176683009(+) 176683664-176683009(+) 176683025-176683633(-) |
Potential amino acid sequence |
MVVDKDSKELLGPNESDSDGSHPNISEPEFSIQGEDLHDCSAAKVELDLLEGTRGTSLETSEPE HPLEAWSPPEDEDVIRTPVHVSRTFESSLQKFSVHDTQSSDLLRKTANSMEGSKAPNITNGSTL GSDFRGNLVPTFRPAERKNLKQHKNQKRQPSSPIDNEHILGG*(+) MNIFWEGEELTFDYNYVRVSGAAPQKCFCGTAKCRGYLGGDISIVDTIITQDDTEADHFEQMVV DKDSKELLGPNESDSDGSHPNISEPEFSIQGEDLHDCSAAKVELDLLEGTRGTSLETSEPEHPL EAWSPPEDEDVIRTPVHVSRTFESSLQKFSVHDTQSSDLLRKTANSMEGSKAPNITNGSTLGSD FRGNLVPTFRPAERKNLKQHKNQKRQPSSPIDNEHILGG*(+) MSILHPPKICSLSIGEDGCRF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |