Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA023097_circ_g.4 |
ID in PlantcircBase | osi_circ_006796 |
Alias | 6:22401691|22406010 |
Organism | Oryza sativa ssp. indica |
Position | chr6: 22401691-22406010 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA023097 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA023097_circ_g.1 BGIOSGA023097_circ_g.2 BGIOSGA023097_circ_g.3 BGIOSGA023097_circ_g.5 BGIOSGA023097_circ_g.6 BGIOSGA023097_circ_g.7 BGIOSGA023097_circ_g.8 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA023097-TA:9 |
Conservation Information | |
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Conserved circRNAs | osa_circ_031177* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22401736-22405991(-) 22401702-22405081(-) 22401887-22402232(+) |
Potential amino acid sequence |
MITRFIKLNCRDDVNLGLKCS*(-) MMSTWALNVHEPGRLKQDLNPCLDPIA*(-) MERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKTIKY WKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCSDKSSFLNSDILFPPGGYPSL RLPVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRINLWNLEINNQSFNIVD VKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSF FTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLTSSLQLSLINL VIILPPETEEDVLFYLKGQMLGIMPVGEKWRDKMLRLLDTQSFATKVNFRVMNLSLITSKVWK* (+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |