Detail information of Os11g0168300_circ_g.1


General Information
CircRNA Name Os11g0168300_circ_g.1
ID in PlantcircBase osa_circ_008584
Alias Os11circ01319
Organism Oryza sativa
Position chr11: 3298037-3302793  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl
Parent gene Os11g0168300
Parent gene annotation Alba, DNA/RNA-binding protein family protein. (Os11t0168300-01);
Alba, DNA/RNA-binding protein family protein. (Os11t0168300-02);
Similar to ribonuclease P. (Os11t0168300-03)
Parent gene strand +
Alternative splicing Os11g0168300_circ_g.3 Os11g0168300_circ_g.4
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os11t0168300-01:9
Os11t0168300-02:9
Os11t0168300-03:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCACAGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCG
TGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGgcagcgaggcgaggcgagcccaatcgga
aggtgcgattcgttcctctcctcctcgatttggttgggctcgcgtcgctgactcggcggcggcg
gcggtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGCGAGGCGAGGCGAGCCCAATCGGAAGGTGCGATTCGTTCCTCTCCTCCTCGATTTGGTTG
GGCTCGCGTCGCTGACTCGGCGGCGGCGGCGGTGGAGGTGGTGGTGGTGGATTTGGGAGGTGGG
GGGAGTTGACGGTTTAGGGCTCGATTTGGTGGTTTTGTGGTTGTGGTCCCCCTTCCCGTGGTTT
CGTGCGCGTCGGCGGTGCTGGACTCGCCGGTGCTTTGGTCGGTGGTGGCGGGACTGCGAGGTGT
AGGGGGGGGGGGGGTTTGGGTGGGTTTTCGGTTGCTCTGCGCGTTGCCGCGGCATGTAGCTGTG
TTTGGGTGCTGCTCTTCGTGGGGGTGGGGATTGGTTCGGCGGCGCGGTTGGAGTTCTGTTCCCT
TGTGTTGGAATCACTCTGTCTTAGGATTAAATCAAACGACTAAGGCTTGGGAGTAGCAGTCGAG
TTATATTTTTAGTTCTAGGTGTACCGGTAGTAGCCGGTGTTCGCACTCTTGTGATTGACTACTC
TGAACGGTTGGTTGTCGATTTCGGAGGCGCAAAATGGTTCTGTACGTGCTACGTGTTGGGTTTC
TGAATTATCACACTAACGTTCTGCTCTAATGAACTTTGCTGTGTTTTAGGTCCTCAGTGTTTGA
GTGTCACTTGCAAACATCACTGTGACTGTGATTTGTCACTAAGGTCCTAAGTAGATTCACTAAT
GTGTGAGAGGGAGCTTCATCTTGACCTGCCAGATTTCTGTACTTAGTGCCTCAGTTTGTCCACG
TTTCATCTCCTTTGTGTGTATTTCATGGTACTAGCAGAATGTCCGTGCTTTGTTACAGAATCAA
AAAGAGTGATGAGTGAAAAAGAGAATCTTATTGCATTTTCCTAGCGAAAATTAATCATTTTCTT
GCAAGTCGATGAAGGGGTGGTCTTACCTGTCAGATTGCAGTAATAGATTTAATCTCTAGTTTCA
AAAGATATTCATCTTGGTTGGGGACTTTGATGGTTTTCATTTTTAACTTACTCTTAGGTTTTGT
ATAAATTTCACCGGTCGTTGGAATCTCACTCAGTCTATATATGATCGAGTGAAAATTAATTATG
ATGCTATCTTATATTCGTATACGGTTTGCTCTCTCCCTATCTTATTTCTGCATAATTTATGATC
CTATCTTGAAGTAATTCTACATTGTGGCTTGTATATATTGTCGTACTGAAATATCAATGTATCA
ATTCATAGGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAGTGAG
AATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATATCAGCTATGGGATGTCGTTGC
TTGAGGTGACCCTACTACTATTACTTTCCTTTGGCTATGTTGTTATTTGAGGTAGAACATGCAG
CAACCTTTTTTGTGCCATGTTTTAACAATTAACAGGACGCGCTTGCAAATTGACATTGTGGACA
GTGAAGATATTTTTAGGGATACCCTGTATGTACTGCACTCATGCATATGCCTTTATTTATCACT
AAGTGTTTCCTACCAATAGTAAGCTGTTCGGTTATCTTAAATTCTGCATCTGCTTGTACCCAGT
TTTTATTGCTGCATAAGTCTAAAAAAGTACATGGCTCAAAAGGCCCCAAAATCTCTGTTATCTG
CATTTTGTAAGCTTGTCTTATTCACACCTCTGCACAGCTCAATCAGAGGTATCTTTGGATTTTT
AAGTTCGAAATCTGCTCTTATGATTAGTGGCTGTGCCAGGAATTCTATGAAGCCTGGGAAAACC
TAACTAAAGCATATCCATATTCTCATATGTCGCCATCAAAATTGGCATCCCAATTTTTTTTATA
TAGAAACATGCCCAAAATGCATGTAAATATTTATAGATGAAAAAAAATGATAATCAGTATAATC
AATTCAAGGTGCTAAATTCAATATTACTGCTGCCTCAACAATTCGCTAACACACCCAAGCACCT
CACGAAACAAAAAAATAATTATATCCATGCAACATATAAGAAAATAATACATATTCATATTTAG
AGTGAAGCATTTTGCTAATACATCCTACAAGGCGAATGCATTTTCTACATGTGGTGGTGAACCT
TGGTCGGTCATGCTAAATTTATACATCGAAAAATTTCAAGACTTGTCTTATATATGAACTAAGT
ATTACTCCCTCCGTTTCAGGTTATAAGACTTTTTATCATTGCCCACATTCATATAGATGTTAAT
GAATCTTGGTATACATATATGTCTAGATTCATTAACATATATATGAATGTAGGCAATGCTAGAA
AGTCTTATAATATGAAACGGAGGAAGTATTATAGCTTGTCCCTGAAACTATAGCACTGATTATT
CAGTCTAATTCAAGACCGTGGTAAAGAATTGAAATTTAGTTGGTCAGTGTTTTTTATATTGTTT
GATGCCTTGACTGTACATCTAAAATGATGCCTAGAGATGCATGGGAGATTGGGAGTTCGATGTA
CAAGTTCATGCATATGATACGAGAATGAGGCGTTAAGTTGGGACTGTGACTGTGAGACAGGCCA
TATAGGAAGCCGAGGATGGCAACAACCTGCTAGCTGCAGCCTGCAGGATCGCTGTTTGCTGGAC
ACCCACCTTTGGCATTTACACATTGCCCGGGAACTACTCTATTTCAGGGAAAAATTAGCGTCGA
CCTCCAGGGATGTTACCATGAAGTCTGGGCAGCCACCTGTGCTGCCCGGAGGTGAATCTGCCTC
TGCTTATGATTTAGGTTGGCATAGTACATCGTCAGTTGCCACTGTAGTACCGCAGAGGACCTCC
TGGTCCTTCCAGTATTTCCTTGTGCTTCTTAATGTCTGTTACTGCTCCTGAACTTTCTGAATAT
TATCGCTTGTCGTTGTATCCATTACGTAGCATTTGATCCTGACTCCTGAAATATGTGTAGTTTG
TCAGCCTGACAAATGTGCAAACATTCGTCCCATTCACTTGATTGTGTAGAAGATACCTTTGCCG
TTTTCATATGCTATTTCTTCAGCTTGTTATGTACAGTGTTCCTTATTCTATAAGATGCCATCGT
CAAAATGTTTGCATATGTCCCCTTATGCCAAAAAGTTTATTGGGTCGTCAGTGGTCAACAATGC
TATATTTCCTCTTGTGGATCCTTATGCAGTCTCATGTTTTTTATTTAATCCTGGATAATGTGAC
TATATGTTCAATATGTTCATCCCCATATCTTCTTTTTCAGGAAAATGGGCATGATGAGATTGTC
ATCAAAGCTATGGGAAGAGCCATCAATAAGACAGTCATGGTTGTTGAATTGATCAAGGTTAGTG
CTAAGTATCACTTCCACCTAGTAATATCTAATACCAAAGTTATTCTTTGTTTTTTCAACTTACT
CTAAATTTTTTGTTCAGAGAAGGATCGGTGGTCTTCATCAGATTACATCTACTGAATCAATTGA
CATCACGGACACTTGGGAACCTTTGGAAGAAGGCCTTCTCCCGTAAGTATTTTTTCAGAAGAAA
AAAGAAAAGGAAAGACTTATCGTGAGCCATGACACTAGTGTACTGCTTACCACAGCCTAGAGAC
CACCCGGCATGTATCAATGATCGCCATAACATTATCCAAGAAAGCACTGGATACGTTATCTCCA
GGGTAAGTTGAACCCTGTCCAGAGCTAATATGTTTTATCCACTTATTATTCACTTATTTGGTGC
TGTATATTAATTTGAAACTGATAGTGAATATGTCTGATCATTGTCTGTTGATTAAATCCTTAGG
TACCAGCCACCTATCCCAGCTGAAGAAGTGAGACCCGCTTTTGACTATGAACACGAAGGTATTG
TTCTCGCATGATTCTGACTTCCTGCTTTAAATATGACTAGCACAACCATTTGATGACAAATTCC
TTCATGGAAATTTAGAATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGG
CAGGGGCAGAGGTATCCTCTTTCTTATGTCTTCTATGAGCACAAAACTACCAGACTACAACACA
CATGGTTATTACCAGTATCTGTTACCATTGTAGGTAGCATGCCATACTGCTTTCAATCTTATGA
ACTGGCTTTGCAGCTTCTACCATCCTGTTGTTCTTAAATAAATAAATAAAAGATCTAGTTTCTA
ACACTTCCTACATTGTGCCTTGTTTAAAAATGTGCTAGCTGCATTTGTAGATTCAATTATGCGT
CTTTTTCCATCTGCAAGTCTAAAAAAAGTGTATGTTATTTGTTGAATGTCTTGCCGACTAGATA
ATATTATGTTTGCTAATTCTTTCATAGCAAATGTGCAGCCATGAGCAATGGTCCCCCCGCTTAT
GATTATGGCGAGGAGTGGGAAGAGGAAGGAGATTATTACAACTACAGAGGCAGAGGGAGAGGCC
GATTTAGAGGACGAGGACGTGGAAGAGGCCGTGGTGGCTACTACGGAGGTGGTCGACGTGGTGG
ATATGGCTATGATTACGGTTATGGCGGCAGGGGGGACTATTATGAAGATCAGGGCGAATACTTT
GAAGAACCAGAGGACTACCCCCCTCCAGGCCGTGGTAAGCTCAGTCTAACATAACCAACAATGT
TTCCAGGTTTCGCCATCTCACTTCTCATGGCTCCTCTCATCCTCGGTCGGCTTCACAGGACGTG
GCAGGGGAAGAAGGGGCGGAGGACCGGGACCATTCCGTGGTCGCGGCCGTGGGCGTGGTCGATT
CTAAGATGAAATCAGGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.099924988
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015