Plant Circular RNA Database

Detail information of AT5G61140_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT5G61140_circ_g.8
					
						ID in PlantcircBase
						ath_circ_045124
					
						Alias
						5:24597307-24601049
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 24597307-24601049  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G61140						
					
						Parent gene annotation
						
							DExH-box ATP-dependent RNA helicase DExH14
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G61140_circ_g.7 AT5G61140_circ_g.9 AT5G61140_circ_g.10 AT5G61140_circ_g.11 AT5G61140_circ_g.12 AT5G61140_circ_g.13 AT5G61140_circ_g.14 AT5G61140_circ_g.15 AT5G61140_circ_g.16 AT5G61140_circ_g.17 AT5G61140_circ_g.18 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G61140.2:16
AT5G61140.1:16

General Information
CircRNA Name	AT5G61140_circ_g.8
ID in PlantcircBase	ath_circ_045124
Alias	5:24597307-24601049
Organism	Arabidpsis thaliana
Position	chr5: 24597307-24601049 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G61140
Parent gene annotation	DExH-box ATP-dependent RNA helicase DExH14
Parent gene strand	+
Alternative splicing	AT5G61140_circ_g.7 AT5G61140_circ_g.9 AT5G61140_circ_g.10 AT5G61140_circ_g.11 AT5G61140_circ_g.12 AT5G61140_circ_g.13 AT5G61140_circ_g.14 AT5G61140_circ_g.15 AT5G61140_circ_g.16 AT5G61140_circ_g.17 AT5G61140_circ_g.18
Support reads	2
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G61140.2:16 AT5G61140.1:16

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTTGTTTTTCTTTGGTTTCTAACCACTGCCCTTTAGGCATTTTTGCATATCTTGGCTGGTGCT
TCTGAGTATGATGAACTTCCTGTGCGGCACAATGAGagacttacttcacaatctcttttcacaa
tcttgcactaccagaggtatatatcttctagaggttgctatttccgaaatagttacaagatcat
ttctacgc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGACTTACTTCACAATCTCTTTTCACAATCTTGCACTACCAGAGGTATATATCTTCTAGAGGTT
GCTATTTCCGAAATAGTTACAAGATCATTTCTACGCTTAAATTATCGGTAAGGTAGGTCCTAAC
AGTCTTCTTCATTCAGGCGCGGACGTCTCACACAGAGCTTTTAGACTTAAAACCTCTTCCTGTG
ACTTCTCTTGGGAATAAGTTGTATGAATCGCTTTACAAATTTTCACATTTCAATCCAATACAGA
CTCAGGTTTGAGCATATTTACCCTGTTACTCTCCTAATTTTATATTAAAAATGTTTTTCTTCAT
CACTCCTTTTTTAGTTAACTGAAAATTGTATGGTTTGGTGTTGCAGATTTTTCATGTGTTATAT
CACACAGACAACAATGTTCTTGTAGGAGCTCCAACTGGAAGTGGGAAAACTATATCTGCTGAAC
TTGCAATGTTGCGTCTCTTCAGTACCCAGCCTGATATGAAGGTATGAGTTTTCACTCTCCTAAC
GCTTGGTAATTATTTAGTTCGAGACTTCGACTAATGTTTCAGTTTATTATACATGATTATGTTT
CAGCTAAATTGCCAGCCTTTTACTGAATCTACCTATTGAAATGAAGAAATGAATCTCTAAAATG
ATATCAAATCACGGCTTAGTTTAGTTTCTAGTGTTCTATTTTATCTTACTGAAGATGCCTAAAT
TTTTGTGGCTTGCAGGTTGTTTACATAGCACCACTGAAGGCTATTGTTCGAGAAAGGATGAATG
ATTGGAAAAAGCATCTTGTTGCTCCACTTGGAAAAGAAATGGTAAGAGGATATTGCCTCGGAGC
ATCTATACATGTTGCAGACTCATAATCCATGATTGCTGTTTATTTGGCTACCAAATATTATTCC
TAACACTTGCATTTCAACAGGTTGAAATGACTGGAGATTACACTCCAGATTTAGTAGCTCTCTT
GTCCGCGGACATCATCATATCTACCCCTGAAAAATGGGATGGCATTAGTCGTAATTGGCATACT
CGAAGTTATGTCAAAAAGGTAAATTTTTGTCAATAGATTGCCTTTTTTGTGAACAGTAACTTAT
GATGTTCTGGGGATATAGGTCGGCCTTGTTATTTTGGATGAGATTCACTTGCTTGGAGCCGACA
GAGGACCGATTCTTGAGGTAGAAGCTTAATAACTATTATATCCCATTTTCTAAGTACTTACGCT
AAGCTCCATCTATTGGTTAGAAGTTTCCAGTTATATCATGACACATGCAATGTATCTATGGTCT
TGGTGAAGAGCTTATATCTTTTCGGCTCAGGTTTTTTCAAAGTTATGTGTTCCACCAGATTTAT
TTTTGATCTACATTTGGTTTCCAGGTTATTGTATCTAGGATGAGATATATATCATCACAGACAG
AGCGCTCCGTCCGGTTTGTTGGGCTTTCTACAGCTCTGGCAAATGCAGGGTTCGTATTTTAACT
TCTCAGACTCTTTGAATATGCTCTTTTCTATGTATTATCATTAAACACGCAACTGAATGTTCGA
GCTGGTAGACTGTTATTCGTGTCTTTTCTGTGCTGATGACATTGTGCTTATAGTGTGATTTGTG
AGTGAAAGACTTTCAACTTTAGTCTTATTTACTAGAAAATGTTAATGTGGAAGATGGCTTAAGA
TATACCTTACTCCCAATTTTTCTGGTAGCCAGTTTTACTTATTCTCTCAAGTCTCCCTTTTCAG
TGATTTGGCTGACTGGTTGGGTGTTGGGGAGATCGGACTTTTCAATTTTAAACCAAGCGTCAGG
CCTGTACCAATTGAAGTTCATATTCAGGTAAGTCAATATCTTTTCTCTAGTTTGCAAACAATTA
ATACCTTTCTTAAACAAAAAATTTATGTATGTCTCCTACACTGTACTTGACTACGCTATTTAAT
TTCCATTTTCGGTGGGTGGATTAAAGGTATTCAAGGAAACCATACAAGTATGAAATTTCCAGAC
TTAACCTTGTTTATTGTTTTCAGGGTTATCCTGGAAAGTATTACTGCCCAAGGATGAATAGCAT
GAACAAGCCAGCATATGCAGCCATATGTACTCATTCACCTACGAAACCTGTTCTTATCTTTGTT
TCATCCCGTAGGCAGACAAGGCTTACTGCATTGGATCTTATTCAGGCATGATTTATCATCAAAC
ACCGATACCGAATCATCTTTTAACTATATAACTCTAATTTGTATCATCCTTTGTATCTTCTTTT
CCTATGAAATGAAGTTTGCTGCCTCCGACGAACATCCGCGGCAATTTCTGAGTGTGTCAGAGGA
AGACTTGCAGATGGTCCTCTCACAGATAACTGATCAAAACCTTCGACATACGTTGCAATTCGGC
ATCGGACTGCATCATGCAGGTTTAAACGACCACGATAGATCTGCAGTCGAAGAGCTTTTCACGA
ACAACAAGATTCAGGCAATTTCCTCAACATATTCTCTCTGCTGCCTTTACCGTATCCATGGTTA
CACTTTTACATTACGATTGATGATGGAATCCATGCTTCCATTACAGGTTTTGGTCTCAACAAGT
ACCTTGGCATGGGGAGTGAACCTACCAGCTCACTTAGTTATTATAAAGGTAAAAGAAGGTCCTC
TTCTATTATTATGTTTGGGATCACTTTCTTGGATTTTCTCCTCTAATGATTTGTCTTTTCTCTT
TAATACCGTTGTTTTTGGCAATGTTTCCTATCAGGGAACAGAATATTTCGACGGGAAAACCAAA
AGATATGTTGACTTCCCTCTTACAGAGATCTTGCAAATGATGGGACGTGCAGGGCGACCACAGT
TTGACCAACATGGGAAAGCGGTTATTCTTGTACATGAACCTAAAAAAAGCTTTTACAAAAAGGT
CAAGCTCAGTTGGAATTATTTGGCAATTTTTGGTATCCGTTGCAACAATTTACCTCAAAAAGAT
CATACTTCCTCTGCATGCAGTTCTTGTACGAACCATTCCCCGTAGAAAGTAGTTTGAAAGAGAA
GCTGCACGATCACTTCAATGCGGAAATCGTCTCTGGAACAATAGGCAACAAAGAAGATGCAGTG
CATTATCTTACATGGACGTATTTGTTTCGTAGACTGGTAAATATGCTTCAGTTTTATTAAAAAG
CGAGATACTACTTGAGAACGTGATTCTGGTTCCTTGAAAAATTGTGCTAAAAGCATGATCAGTT
CCCTGCAGCCAGATTCTCTTTTTCCTTTCAGATTTTTCCATTACTGCAGAATAACCAGTTCATG
ACTCAATCTGGTATTTGATGTAACAGATGGCTAATCCTGCTTACTATGGGCTAGAAGGTACTCA
AGACGAAACAATCTGTTCCTACTTATCAAGGTAAATATCAAAGTTATTAAATAAAGAAGATTTC
TCTAACTAGAACCATTGTAATATTGGTGTATGCGGGCTGCTTTTTGTGTAGATTGGTGCAAACC
ACATTTGAGGATCTTGAAGACAGTGGTTGCCTCAAAGTAAATGAAGATAGTGTGGAGCCTACGA
TGCTGGGTACAATAGCGTCACAGTATTACCTTTGCTACATGACCGTGTCTATGTTTGGCTCTAA
TATAGGTCCTGACACATCGCTTGAAGTAAGAAGCTGATCCAGTTTATATTGATTATTCTTTTTG
TTTTTCTTTGGTTTCTAACCACTGCCCTTTAGGCATTTTTGCATATCTTGGCTGGTGCTTCTGA
GTATGATGAACTTCCTGTGCGGCACAATGAG
						
					

			
		

Sequences
Splice junction sequence	TTTTGTTTTTCTTTGGTTTCTAACCACTGCCCTTTAGGCATTTTTGCATATCTTGGCTGGTGCT TCTGAGTATGATGAACTTCCTGTGCGGCACAATGAGagacttacttcacaatctcttttcacaa tcttgcactaccagaggtatatatcttctagaggttgctatttccgaaatagttacaagatcat ttctacgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGACTTACTTCACAATCTCTTTTCACAATCTTGCACTACCAGAGGTATATATCTTCTAGAGGTT GCTATTTCCGAAATAGTTACAAGATCATTTCTACGCTTAAATTATCGGTAAGGTAGGTCCTAAC AGTCTTCTTCATTCAGGCGCGGACGTCTCACACAGAGCTTTTAGACTTAAAACCTCTTCCTGTG ACTTCTCTTGGGAATAAGTTGTATGAATCGCTTTACAAATTTTCACATTTCAATCCAATACAGA CTCAGGTTTGAGCATATTTACCCTGTTACTCTCCTAATTTTATATTAAAAATGTTTTTCTTCAT CACTCCTTTTTTAGTTAACTGAAAATTGTATGGTTTGGTGTTGCAGATTTTTCATGTGTTATAT CACACAGACAACAATGTTCTTGTAGGAGCTCCAACTGGAAGTGGGAAAACTATATCTGCTGAAC TTGCAATGTTGCGTCTCTTCAGTACCCAGCCTGATATGAAGGTATGAGTTTTCACTCTCCTAAC GCTTGGTAATTATTTAGTTCGAGACTTCGACTAATGTTTCAGTTTATTATACATGATTATGTTT CAGCTAAATTGCCAGCCTTTTACTGAATCTACCTATTGAAATGAAGAAATGAATCTCTAAAATG ATATCAAATCACGGCTTAGTTTAGTTTCTAGTGTTCTATTTTATCTTACTGAAGATGCCTAAAT TTTTGTGGCTTGCAGGTTGTTTACATAGCACCACTGAAGGCTATTGTTCGAGAAAGGATGAATG ATTGGAAAAAGCATCTTGTTGCTCCACTTGGAAAAGAAATGGTAAGAGGATATTGCCTCGGAGC ATCTATACATGTTGCAGACTCATAATCCATGATTGCTGTTTATTTGGCTACCAAATATTATTCC TAACACTTGCATTTCAACAGGTTGAAATGACTGGAGATTACACTCCAGATTTAGTAGCTCTCTT GTCCGCGGACATCATCATATCTACCCCTGAAAAATGGGATGGCATTAGTCGTAATTGGCATACT CGAAGTTATGTCAAAAAGGTAAATTTTTGTCAATAGATTGCCTTTTTTGTGAACAGTAACTTAT GATGTTCTGGGGATATAGGTCGGCCTTGTTATTTTGGATGAGATTCACTTGCTTGGAGCCGACA GAGGACCGATTCTTGAGGTAGAAGCTTAATAACTATTATATCCCATTTTCTAAGTACTTACGCT AAGCTCCATCTATTGGTTAGAAGTTTCCAGTTATATCATGACACATGCAATGTATCTATGGTCT TGGTGAAGAGCTTATATCTTTTCGGCTCAGGTTTTTTCAAAGTTATGTGTTCCACCAGATTTAT TTTTGATCTACATTTGGTTTCCAGGTTATTGTATCTAGGATGAGATATATATCATCACAGACAG AGCGCTCCGTCCGGTTTGTTGGGCTTTCTACAGCTCTGGCAAATGCAGGGTTCGTATTTTAACT TCTCAGACTCTTTGAATATGCTCTTTTCTATGTATTATCATTAAACACGCAACTGAATGTTCGA GCTGGTAGACTGTTATTCGTGTCTTTTCTGTGCTGATGACATTGTGCTTATAGTGTGATTTGTG AGTGAAAGACTTTCAACTTTAGTCTTATTTACTAGAAAATGTTAATGTGGAAGATGGCTTAAGA TATACCTTACTCCCAATTTTTCTGGTAGCCAGTTTTACTTATTCTCTCAAGTCTCCCTTTTCAG TGATTTGGCTGACTGGTTGGGTGTTGGGGAGATCGGACTTTTCAATTTTAAACCAAGCGTCAGG CCTGTACCAATTGAAGTTCATATTCAGGTAAGTCAATATCTTTTCTCTAGTTTGCAAACAATTA ATACCTTTCTTAAACAAAAAATTTATGTATGTCTCCTACACTGTACTTGACTACGCTATTTAAT TTCCATTTTCGGTGGGTGGATTAAAGGTATTCAAGGAAACCATACAAGTATGAAATTTCCAGAC TTAACCTTGTTTATTGTTTTCAGGGTTATCCTGGAAAGTATTACTGCCCAAGGATGAATAGCAT GAACAAGCCAGCATATGCAGCCATATGTACTCATTCACCTACGAAACCTGTTCTTATCTTTGTT TCATCCCGTAGGCAGACAAGGCTTACTGCATTGGATCTTATTCAGGCATGATTTATCATCAAAC ACCGATACCGAATCATCTTTTAACTATATAACTCTAATTTGTATCATCCTTTGTATCTTCTTTT CCTATGAAATGAAGTTTGCTGCCTCCGACGAACATCCGCGGCAATTTCTGAGTGTGTCAGAGGA AGACTTGCAGATGGTCCTCTCACAGATAACTGATCAAAACCTTCGACATACGTTGCAATTCGGC ATCGGACTGCATCATGCAGGTTTAAACGACCACGATAGATCTGCAGTCGAAGAGCTTTTCACGA ACAACAAGATTCAGGCAATTTCCTCAACATATTCTCTCTGCTGCCTTTACCGTATCCATGGTTA CACTTTTACATTACGATTGATGATGGAATCCATGCTTCCATTACAGGTTTTGGTCTCAACAAGT ACCTTGGCATGGGGAGTGAACCTACCAGCTCACTTAGTTATTATAAAGGTAAAAGAAGGTCCTC TTCTATTATTATGTTTGGGATCACTTTCTTGGATTTTCTCCTCTAATGATTTGTCTTTTCTCTT TAATACCGTTGTTTTTGGCAATGTTTCCTATCAGGGAACAGAATATTTCGACGGGAAAACCAAA AGATATGTTGACTTCCCTCTTACAGAGATCTTGCAAATGATGGGACGTGCAGGGCGACCACAGT TTGACCAACATGGGAAAGCGGTTATTCTTGTACATGAACCTAAAAAAAGCTTTTACAAAAAGGT CAAGCTCAGTTGGAATTATTTGGCAATTTTTGGTATCCGTTGCAACAATTTACCTCAAAAAGAT CATACTTCCTCTGCATGCAGTTCTTGTACGAACCATTCCCCGTAGAAAGTAGTTTGAAAGAGAA GCTGCACGATCACTTCAATGCGGAAATCGTCTCTGGAACAATAGGCAACAAAGAAGATGCAGTG CATTATCTTACATGGACGTATTTGTTTCGTAGACTGGTAAATATGCTTCAGTTTTATTAAAAAG CGAGATACTACTTGAGAACGTGATTCTGGTTCCTTGAAAAATTGTGCTAAAAGCATGATCAGTT CCCTGCAGCCAGATTCTCTTTTTCCTTTCAGATTTTTCCATTACTGCAGAATAACCAGTTCATG ACTCAATCTGGTATTTGATGTAACAGATGGCTAATCCTGCTTACTATGGGCTAGAAGGTACTCA AGACGAAACAATCTGTTCCTACTTATCAAGGTAAATATCAAAGTTATTAAATAAAGAAGATTTC TCTAACTAGAACCATTGTAATATTGGTGTATGCGGGCTGCTTTTTGTGTAGATTGGTGCAAACC ACATTTGAGGATCTTGAAGACAGTGGTTGCCTCAAAGTAAATGAAGATAGTGTGGAGCCTACGA TGCTGGGTACAATAGCGTCACAGTATTACCTTTGCTACATGACCGTGTCTATGTTTGGCTCTAA TATAGGTCCTGACACATCGCTTGAAGTAAGAAGCTGATCCAGTTTATATTGATTATTCTTTTTG TTTTTCTTTGGTTTCTAACCACTGCCCTTTAGGCATTTTTGCATATCTTGGCTGGTGCTTCTGA GTATGATGAACTTCCTGTGCGGCACAATGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.130298639

Conservation Information
Conserved circRNAs	NA
PMCS	0.130298639

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G61140_circ_g.8

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