Detail information of Os03g0221500_circ_g.2


General Information
CircRNA Name Os03g0221500_circ_g.2
ID in PlantcircBase osa_circ_018572
Alias Os_ciR9115
Organism Oryza sativa
Position chr3: 6371804-6371951  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0221500
Parent gene annotation Glycoside hydrolase, family 17 protein. (Os03t0221500-01);Glycos
ide hydrolase, family 17 protein. (Os03t0221500-02);Glycoside hy
drolase, family 17 protein. (Os03t0221500-03)
Parent gene strand +
Alternative splicing Os03g0221500_circ_g.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0221500-01:1
Os03t0221500-02:1
Os03t0221500-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGACCCGGCGATGCTCGCGGCGCTCGCCAACACCGGCATCCGCGTCATCGTCTCCGTGCCGAA
CGAGCAGCTCgtcggtaccggcgccgacacagatcacgacgctgctccgctcgcagaacatccg
ccacgtgcggctgtacgacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGGTACCGGCGCCGACACAGATCACGACGCTGCTCCGCTCGCAGAACATCCGCCACGTGCGG
CTGTACGACGCCGACCCGGCGATGCTCGCGGCGCTCGCCAACACCGGCATCCGCGTCATCGTCT
CCGTGCCGAACGAGCAGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.307549718
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015