Detail information of Os03g0221500_circ_g.1


General Information
CircRNA Name Os03g0221500_circ_g.1
ID in PlantcircBase osa_circ_018571
Alias NA
Organism Oryza sativa
Position chr3: 6371767-6373132  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0221500
Parent gene annotation Glycoside hydrolase, family 17 protein. (Os03t0221500-01);Glycos
ide hydrolase, family 17 protein. (Os03t0221500-02);Glycoside hy
drolase, family 17 protein. (Os03t0221500-03)
Parent gene strand +
Alternative splicing Os03g0221500_circ_g.2
Support reads 2
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0221500-02:2
Os03t0221500-03:2
Os03t0221500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAACCATAAGAGATTCCTGCTTTCCAAACATTTGGATTTGAGCTTATTTCGTTCTCTCTGTT
TTCTTCAGGCCACGGGTCTTGCGTTTACGCTGGAAGgggcgtacatcggcgtcaacattggcac
ggccatgacgtcggtaccggcgccgacacagatcacgacgctgctccgctcgcagaacatccgc
cacgtgcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCGTACATCGGCGTCAACATTGGCACGGCCATGACGTCGGTACCGGCGCCGACACAGATCAC
GACGCTGCTCCGCTCGCAGAACATCCGCCACGTGCGGCTGTACGACGCCGACCCGGCGATGCTC
GCGGCGCTCGCCAACACCGGCATCCGCGTCATCGTCTCCGTGCCGAACGAGCAGCTCCTCGCCA
TCGGCAACTCCAACGCCACGGCGGCCAACTGGGTGGCGCGCAACGTGGCCGCGCACTACCCTTC
CGTGAACATCACGGCCATCGCGGTCGGCTCCGAGGTGCTCTCCACGCTGCCCAACGCGGCGCCG
CTCCTCATGCCGGCCATCCGCTACCTCCAGAACGCGCTGGTGGCCGCGGCGCTCGACCGGTACA
TCAAGATCTCGACGCCGCACTCCTCGTCCATCATCCTCGACTCGTTCCCGCCGTCGCAGGCCTT
CTTCAACCGCTCCCTGGACCCGGTGCTGGTGCCGCTGCTCAAGTTCTTGCAGTCCACGGGCTCG
CCGCTGATGCTCAACGTGTACCCGTACTACGACTACATGCGCTCCAACGGCGTCATCCCGCTGG
ACTACGCGCTGTTCCGGCCGCTGCCGCCGAACAAGGAGGCGGTGGACGCCAACACCCTGCTGCA
CTACACCAACGTGTTCGACGCGGTCGTGGACGCTGCCTACTTCGCCATGGCGTACCTCAACGTC
ACCAACGTGCCGGTGATGGTGACGGAGACCGGGTGGCCGCACAAGGGCGACCCGTCCAACGAGC
CCGACGCCACCTCCGACAACGCCGACACCTACAACAGTAACCTCATCCGGCACGTGATGAACAC
CACCGGCACGCCGAAGCACCCCGGCGTCGCCGTGCCGACGTACATCTACGAGCTCTACGACGAG
GACACCCGCCCCGGCTCGACGTCGGAGAAGTACTGGGGCCTGTTCGACATGAACGGCATCCCGG
CGTACACCCTGCACCTGACAGGCTCCGGCGTGCTGCTCGCCAACGACACGACGAACCAGACCTA
CTGCGTGGCGCGGGAGGGCGCTGACGAGAAGATGCTGCAGGCGGCGCTCGACTGGGCTTGCGGC
CCGGGCAAGGTGGACTGCTCCGCGCTGATGCAGGGGCAGCCGTGCTACGACCCGGACAACGTCG
AGGCGCACGCCACCTACGCCTTCAACGCCTACTACCATGGCATGGGCATGGGCTCCGGGACGTG
CTACTTCAGCGGTGTCGCCGTGATCACCACCACCGATCCCAGTAAGTTCACAAAACCATAAGAG
ATTCCTGCTTTCCAAACATTTGGATTTGAGCTTATTTCGTTCTCTCTGTTTTCTTCAGGCCACG
GGTCTTGCGTTTACGCTGGAAG
Conservation Information
Conserved circRNAs osi_circ_014070
PMCS 0.305887622
Functional Information
Coding potential Y
Potential coding position 6371800-6372571(+)
6371961-6373008(-)
6372958-6373008(-)
Potential amino acid sequence MTSVPAPTQITTLLRSQNIRHVRLYDADPAMLAALANTGIRVIVSVPNEQLLAIGNSNATAANW
VARNVAAHYPSVNITAIAVGSEVLSTLPNAAPLLMPAIRYLQNALVAAALDRYIKISTPHSSSI
ILDSFPPSQAFFNRSLDPVLVPLLKFLQSTGSPLMLNVYPYYDYMRSNGVIPLDYALFRPLPPN
KEAVDANTLLHYTNVFDAVVDAAYFAMAYLNVTNVPVMVTETGWPHKGDPSNEPDATSDNADTY
NSNLIRHVMNTTGTPKHPGVAVPTYIYELYDEDTRPGSTSEKYWGLFDMNGIPAYTLHLTGSGV
LLANDTTNQTYCVAREGADEKMLQAALDWACGPGKVDCSALMQGQPCYDPDNVEAHATYAFNAY
YHGMGMGSGTCYFSGVAVITTTDPSHGSCVYAGRGVHRRQHWHGHDVGTGADTDHDAAPLAEHP
PRAAVRRRPGDARGARQHRHPRHRLRAERAAPRHRQLQRHGGQLGGAQRGRALPFREHHGHRGR
LRGALHAAQRGAAPHAGHPLPPERAGGRGARPVHQDLDAALLVHHPRLVPAVAGLLQPLPGPGA
GAAAQVLAVHGLAADAQRVPVLRLHALQRRHPAGLRAVPAAAAEQGGGGRQHPAALHQRVRRGR
GRCLLRHGVPQRHQRAGDGDGDRVAAQGRPVQRARRHLRQRRHLQQ*(+)
MARSCSFGTETMTRMPVLASAASIAGSASYSRTWRMFCERSSVVICVGAGTDVMAVPMLTPMYA
PSSVNARPVAGIGGGDHGDTAEVARPGAHAHAMVVGVEGVGGVRLDVVRVVARLPLHQRGAVHL
ARAASPVERRLQHLLVSALPRHAVGLVRRVVGEQHAGACQVQGVRRDAVHVEQAPVLLRRRAGA
GVLVVELVDVRRHGDAGVLRRAGGVHHVPDEVTVVGVGVVGGGVGLVGRVALVRPPGLRHHHRH
VGDVEVRHGEVGSVHDRVEHVGVVQQGVGVHRLLVRRQRPEQRVVQRDDAVGAHVVVVRVHVEH
QRRARGLQELEQRHQHRVQGAVEEGLRRRERVEDDGRGVRRRDLDVPVERRGHQRVLEVADGRH
EERRRVGQRGEHLGADRDGRDVHGRVVRGHVARHPVGRRGVGVADGEELLVRHGDDDADAGVGE
RREHRRVGVVQPHVADVLRAEQRRDLCRRRYRRHGRANVDADVRPFQRKRKTRGWDRWW*(-)
MVVGVEGVGGVRLDVVRVVARLPLHQRGAVHLARAASPVERRLQHLLVSALPRHAVGLVRRVVG
EQHAGACQVQGVRRDAVHVEQAPVLLRRRAGAGVLVVELVDVRRHGDAGVLRRAGGVHHVPDEV
TVVGVGVVGGGVGLVGRVALVRPPGLRHHHRHVGDVEVRHGEVGSVHDRVEHVGVVQQGVGVHR
LLVRRQRPEQRVVQRDDAVGAHVVVVRVHVEHQRRARGLQELEQRHQHRVQGAVEEGLRRRERV
EDDGRGVRRRDLDVPVERRGHQRVLEVADGRHEERRRVGQRGEHLGADRDGRDVHGRVVRGHVA
RHPVGRRGVGVADGEELLVRHGDDDADAGVGERREHRRVGVVQPHVADVLRAEQRRDLCRRRYR
RHGRANVDADVRPFQRKRKTRGWDRWW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017