Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0221500_circ_g.1 |
ID in PlantcircBase | osa_circ_018571 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 6371767-6373132 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0221500 |
Parent gene annotation |
Glycoside hydrolase, family 17 protein. (Os03t0221500-01);Glycos ide hydrolase, family 17 protein. (Os03t0221500-02);Glycoside hy drolase, family 17 protein. (Os03t0221500-03) |
Parent gene strand | + |
Alternative splicing | Os03g0221500_circ_g.2 |
Support reads | 2 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0221500-02:2 Os03t0221500-03:2 Os03t0221500-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014070 |
PMCS | 0.305887622 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6371800-6372571(+) 6371961-6373008(-) 6372958-6373008(-) |
Potential amino acid sequence |
MTSVPAPTQITTLLRSQNIRHVRLYDADPAMLAALANTGIRVIVSVPNEQLLAIGNSNATAANW VARNVAAHYPSVNITAIAVGSEVLSTLPNAAPLLMPAIRYLQNALVAAALDRYIKISTPHSSSI ILDSFPPSQAFFNRSLDPVLVPLLKFLQSTGSPLMLNVYPYYDYMRSNGVIPLDYALFRPLPPN KEAVDANTLLHYTNVFDAVVDAAYFAMAYLNVTNVPVMVTETGWPHKGDPSNEPDATSDNADTY NSNLIRHVMNTTGTPKHPGVAVPTYIYELYDEDTRPGSTSEKYWGLFDMNGIPAYTLHLTGSGV LLANDTTNQTYCVAREGADEKMLQAALDWACGPGKVDCSALMQGQPCYDPDNVEAHATYAFNAY YHGMGMGSGTCYFSGVAVITTTDPSHGSCVYAGRGVHRRQHWHGHDVGTGADTDHDAAPLAEHP PRAAVRRRPGDARGARQHRHPRHRLRAERAAPRHRQLQRHGGQLGGAQRGRALPFREHHGHRGR LRGALHAAQRGAAPHAGHPLPPERAGGRGARPVHQDLDAALLVHHPRLVPAVAGLLQPLPGPGA GAAAQVLAVHGLAADAQRVPVLRLHALQRRHPAGLRAVPAAAAEQGGGGRQHPAALHQRVRRGR GRCLLRHGVPQRHQRAGDGDGDRVAAQGRPVQRARRHLRQRRHLQQ*(+) MARSCSFGTETMTRMPVLASAASIAGSASYSRTWRMFCERSSVVICVGAGTDVMAVPMLTPMYA PSSVNARPVAGIGGGDHGDTAEVARPGAHAHAMVVGVEGVGGVRLDVVRVVARLPLHQRGAVHL ARAASPVERRLQHLLVSALPRHAVGLVRRVVGEQHAGACQVQGVRRDAVHVEQAPVLLRRRAGA GVLVVELVDVRRHGDAGVLRRAGGVHHVPDEVTVVGVGVVGGGVGLVGRVALVRPPGLRHHHRH VGDVEVRHGEVGSVHDRVEHVGVVQQGVGVHRLLVRRQRPEQRVVQRDDAVGAHVVVVRVHVEH QRRARGLQELEQRHQHRVQGAVEEGLRRRERVEDDGRGVRRRDLDVPVERRGHQRVLEVADGRH EERRRVGQRGEHLGADRDGRDVHGRVVRGHVARHPVGRRGVGVADGEELLVRHGDDDADAGVGE RREHRRVGVVQPHVADVLRAEQRRDLCRRRYRRHGRANVDADVRPFQRKRKTRGWDRWW*(-) MVVGVEGVGGVRLDVVRVVARLPLHQRGAVHLARAASPVERRLQHLLVSALPRHAVGLVRRVVG EQHAGACQVQGVRRDAVHVEQAPVLLRRRAGAGVLVVELVDVRRHGDAGVLRRAGGVHHVPDEV TVVGVGVVGGGVGLVGRVALVRPPGLRHHHRHVGDVEVRHGEVGSVHDRVEHVGVVQQGVGVHR LLVRRQRPEQRVVQRDDAVGAHVVVVRVHVEHQRRARGLQELEQRHQHRVQGAVEEGLRRRERV EDDGRGVRRRDLDVPVERRGHQRVLEVADGRHEERRRVGQRGEHLGADRDGRDVHGRVVRGHVA RHPVGRRGVGVADGEELLVRHGDDDADAGVGERREHRRVGVVQPHVADVLRAEQRRDLCRRRYR RHGRANVDADVRPFQRKRKTRGWDRWW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |