Detail information of Os06g0730600_circ_g.4


General Information
CircRNA Name Os06g0730600_circ_g.4
ID in PlantcircBase osa_circ_032519
Alias NA
Organism Oryza sativa
Position chr6: 31140778-31143699  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0730600
Parent gene annotation Peptidase S9A, prolyl oligopeptidase family protein. (Os06t07306
00-01)
Parent gene strand -
Alternative splicing Os06g0730600_circ_g.3 Os06g0730600_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0730600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTAGTAATACTGGCCTTTGCGAAGAGGCGCTCCTATATCATCTTCCTTGATTCTTGCTCTAA
TTTCAGCATATATTTCATCCTCGAGGTTCTTGACATagtatcaatcttcttcagcacagacact
cctgaatccatgtcatagtcgaaaaccgagggtggggtcctcattgagctataatggaaccgaa
caacagat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1115
Transcript exons: 31140778-31141069,31142152-31142498,31143140-31143334,31
143419-31143699
AGTATCAATCTTCTTCAGCACAGACACTCCTGAATCCATGTCATAGTCGAAAACCGAGGGTGGG
GTCCTCATTGAGCTATAATGGAACCGAACAACAGATGAACCAAACTGTGATTGCTCAGGTTCCA
CGTCATATGCTGGATCAACAAAATCAATCTCCCGACCTCCCTGAAGTTGCCCAATTGGCTCTCC
AGTGGCTGGTAGGCGATACGCAGTAACTTTCGGTAGACCATTTTGACGTTCATATACAGCAATA
TGATTCTCAAAGAGCTGGAAACTCTGTATTTTCACACTTTCTCTGTGTGGTAGCAAGACAGTGG
TCTCAGCTACATTATCCAATGGGCAAGCAATCAACTCAGAGTTGTAGAATTCCTCACTTCTCCT
CTTAATATAGAAATGGTTTCCACGATGACTGGCTGTTGTATCAATACCATAAACACAAGGAGTT
AAAACCACAAGCTCCTTGCTTTGTTTGGATATATCCAAGTAGAATATAAAGCTTGTGTTTTTGC
TTCCAGATTCAACAAACAAATACTGCTTGCTTTCAGAAGTTTGGAGGCCAAGTGAAAACATGTC
ATCTTTTTCATGATACAAACAAATATCATCTGACTGATTAGACTCTAACATGTGCAACCATACT
TTATCTGGGCGGAGAATGGTGTCCATTGTTATGTAAACAAGGTGGTCATCACCAGCCCACTCAA
TGTCAGAAGTAATTCCTTCAAGTGGTTGGCCAACAAATTTTCCACTCTCCGCATCAATAACATA
AACAGTGTAAATTTCATCACCTTTAGTGTCTTGTGCATAAGCAACTAGCTTACCATTAGGACTG
ACCTTGAAAGCCCCAATGCTATAGTAGTCATGGCCCTCGGCCTTTACATTCTCATCCAAAATAA
TATGCTCATGAGGAGCATTGGGTCCTGTGGGCATGACATCATAGACTGTAACAGGAGCATCAGT
TGGCACGAGACGCCTGCAGTGTTGCACATACTCCTTGCCAGTCAGTGTTCTGTTATAGTAGTAA
TACTGGCCTTTGCGAAGAGGCGCTCCTATATCATCTTCCTTGATTCTTGCTCTAATTTCAGCAT
ATATTTCATCCTCGAGGTTCTTGACAT

Genomic sequence AGTATCAATCTTCTTCAGCACAGACACTCCTGAATCCATGTCATAGTCGAAAACCGAGGGTGGG
GTCCTCATTGAGCTATAATGGAACCGAACAACAGATGAACCAAACTGTGATTGCTCAGGTTCCA
CGTCATATGCTGGATCAACAAAATCAATCTCCCGACCTCCCTGAAGTTGCCCAATTGGCTCTCC
AGTGGCTGGTAGGCGATACGCAGTAACTTTCGGTAGACCATTTTGACGTTCATATACAGCAATA
TGATTCTCAAAGAGCTGGAAACTCTGTATTTTCACACTGGAAAGAGTTTTATAAGTTTTTAATG
CAGCTGTAGTATGCAGCCCTAATACACAACAGACCCATTGGTAAGAGAGCAAAGTACAAGAAAA
TATGCAGAATAATTTAAGTGAACAAGCAATGGTTGTGTAAAAGTTGTCCATTAGGCACTCTATC
AGATGCAGCAAATTACATTTCTATATTGATAACATAGTTAAATTATTAAAAGTGCTTTCAGAGT
GTACTTCTATCAGATGCAGTACAATACATTTCTATCTCGATTACATAATTTTAAATTCTTTTAA
AAACAATTAGAGTGTACTAGATAAAACACCCTGGAATTTTATTGCAAGAATTTCAAACTTCTAG
CAAGATTCCTTAAACAAACAAACATAAATTCTATATAATTTCATCAGAATTCTTCTTGATCAGT
GAACTTCCAAATAGAAAAAGATCTATGTAGTGGCCGTGAGCTATCCTTGCAGTTTCGGTGTTCA
TACAGAAAAGTCAGTTCTCTTATTTGAAATCCTGTCAGAAAATCAAGGCTAGTACAATCATATG
TTTGCTTGTGAATTGTGATATACTGATATGAATTTGAAGACTTATGTGATATGTCTTATCTCTT
ATGCTATTGCTAGCCCCTTTCTGAGTTGGATGGATGATGTCAAGTGAACAACTGTTATAATCCA
TCATTTCTGTATCGGCCCCAAATTAGCAAATGACAAATAAATAAAAATAATATAGATCAAATCA
CCTCAAGAATGGAGTTTCCACAATATATAAAATGTTCAAGAATGTGCTAGGCACTAGAGGGTCA
GCAGGGCAATTGCCTAGGGGCACCTAGGACTAACTCGACTAGTGAATTCCAAGTAATCAGGAAG
CATATTACATAAAAATTAGACAATTGAACACTAAAAAAGCAGAAGAGCCCCCAAGGCAGGTTAG
CCACCTAAGCACCATCTAATGCCTAACTGCGATAACTAGGCGGCATCTAGGGCCTACTTTTTAG
AACACCGTACACATTTTTTGTGTACTAGCTATATCTGAACATGTTCCATCAACCAAAAATATAA
TCTTAGAAGCTTAAATGACAATTAGACTACCTTTCTCTGTGTGGTAGCAAGACAGTGGTCTCAG
CTACATTATCCAATGGGCAAGCAATCAACTCAGAGTTGTAGAATTCCTCACTTCTCCTCTTAAT
ATAGAAATGGTTTCCACGATGACTGGCTGTTGTATCAATACCATAAACACAAGGAGTTAAAACC
ACAAGCTCCTTGCTTTGTTTGGATATATCCAAGTAGAATATAAAGCTTGTGTTTTTGCTTCCAG
ATTCAACAAACAAATACTGCTTGCTTTCAGAAGTTTGGAGGCCAAGTGAAAACATGTCATCTTT
TTCATGATACAAACAAATATCATCTGACTGATTAGACTCTAACATGTGCAACCATACCTGCAAA
AGGCCACACAATAAAGGGATCAAGTCAACATAAATATAAAACACAGTGCAAAAAAAGGAAAGGA
ACAGTTGTCAGCCTTGATGGTAGTACCAACATTTGGTACTGTAACAACAAGAGAGTCTCTACAG
ACTTTGGCATAAATGAATAGTCTGAACAGATCACTAGCATATCTTGAACAGGGATTGCAAATAG
AAATCCTAGGAGAAATATCTAAGAAGAAGGGCAGATTCATTTTTCCTATAAAAAGAAGTAAAAT
AAAATATTTTAGCATGAAAGGCGAAACAATTCGCACAGTTGTGCAATGAATAGCTTGAGAGAGC
AATGATGACCTGGGTAGTAGCACTAATATGATAATGAAACGAAGACTTCTAAAAATTATTTCTA
GAGAAATGCAATTTGTTAGTGAACTGACGATATTTCGCACAGTTGTGCAATGAATAGCTTGAGA
GAGCAATGACGACCTGGGTAGTAGCACTAATATGATAATGAAACGAAGACTTCTAAAAATTATT
TCTAGAGAAATGCAATTTGTTAGTGAACTGACGATATTTCCTTATTTTTATTATGTTCCCTTGT
ATATACACCTTGTACCAAGACAAATGTCATGTAGGGGTGAGAAGAAGAGCTCACACACTTTATC
TGGGCGGAGAATGGTGTCCATTGTTATGTAAACAAGGTGGTCATCACCAGCCCACTCAATGTCA
GAAGTAATTCCTTCAAGTGGTTGGCCAACAAATTTTCCACTCTCCGCATCAATAACATAAACAG
TGTAAATTTCATCACCTTTAGTGTCTTGTGCATAAGCAACTAGCTTACCATTAGGACTGACCTG
AAATGAATATAAGAGAGGTTGTAGAGGCACATGCATAGGAGGAGTAATGAGTCTCTTACACACA
AGAGGAGGAAGATATACCTTGAAAGCCCCAATGCTATAGTAGTCATGGCCCTCGGCCTTTACAT
TCTCATCCAAAATAATATGCTCATGAGGAGCATTGGGTCCTGTGGGCATGACATCATAGACTGT
AACAGGAGCATCAGTTGGCACGAGACGCCTGCAGTGTTGCACATACTCCTTGCCAGTCAGTGTT
CTGTTATAGTAGTAATACTGGCCTTTGCGAAGAGGCGCTCCTATATCATCTTCCTTGATTCTTG
CTCTAATTTCAGCATATATTTCATCCTCGAGGTTCTTGACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.340571381
Functional Information
Coding potential Y
Potential coding position 31143447-31140820(+)
31143516-31143636(-)
Potential amino acid sequence MALGLYILIQNNMLMRSIGSCGHDIIDCNRSISWHETPAVLHILLASQCSVIVVILAFAKRRSY
IIFLDSCSNFSIYFILEVLDIVSIFFSTDTPESMS*(+)
MPTGPNAPHEHIILDENVKAEGHDYYSIGAFKVSPNGKLVAYAQDTKGDEIYTVYVIDAESGKF
VGQPLEGITSDIEWAGDDHLVYITMDTILRPDKVWLHMLESNQSDDICLYHEKDDMFSLGLQTS
ESKQYLFVESGSKNTSFIFYLDISKQSKELVVLTPCVYGIDTTASHRGNHFYIKRRSEEFYNSE
LIACPLDNVAETTVLLPHRESVKIQSFQLFENHIAVYERQNGLPKVTAYRLPATGEPIGQLQGG
REIDFVDPAYDVEPEQSQFGSSVVRFHYSSMRTPPSVFDYDMDSGVSVLKKIDTMSRTSRMKYM
LKLEQESRKMI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017