Detail information of Os06g0730600_circ_g.3


General Information
CircRNA Name Os06g0730600_circ_g.3
ID in PlantcircBase osa_circ_032518
Alias NA
Organism Oryza sativa
Position chr6: 31139191-31142498  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0730600
Parent gene annotation Peptidase S9A, prolyl oligopeptidase family protein. (Os06t07306
00-01)
Parent gene strand -
Alternative splicing Os06g0730600_circ_g.4 Os06g0730600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0730600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTTCAGAAGTTTGGAGGCCAAGTGAAAACATGTCATCTTTTTCATGATACAAACAAATATC
ATCTGACTGATTAGACTCTAACATGTGCAACCATACctcgtaggagccatagccatatagcagc
attgggtctgagccatcaagattcacccgatcttttctgtatagaatggtcatgggtatttgag
tgccatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGTAGGAGCCATAGCCATATAGCAGCATTGGGTCTGAGCCATCAAGATTCACCCGATCTTTT
CTGTATAGAATGGTCATGGGTATTTGAGTGCCATCAGAAGCGGCAGCCCATTTTCTTTCTGTTA
CATAGTTTGATGCATCAAATCCACCTAAAACCTAAAAAAATATTTAAAATCTCAAGTCAGAAAG
AGTTCGTAGAAGTGCCTCTCTAATCTCAAATAATTAGCAGAGGCTCATAAAAGCACCCTTCTAC
TGATAGCTCAATAAGTAGATATGCTGGTCAGAGTGAAATAGATACCGAACAAAACCCTGTCCCC
ATCTGCCCCGCCGCTCCGTGGGCCGATGCAGGCTATGCATAACCATGGTATCATAATCCAAACC
CAATAACAAATCCCTAGATTACTCATTCGCTCATTCCACTCTCTACCATTGCAGTACCGTCCTC
CTAGCCGGCTTGCTGCATCCGTTGCTGTACCGTCTTCCTAGCCGGCTCGCTGCATCCGTTGCTG
TACCGTCCTCCTAGCCGACTCGCTGCATCGTCTGCCACCAGCCATGATGCCCTCATCCTGAAGC
ACGGCAGCTGCGAGGTGCCCGTCCTCGAGCATGACGAACACTCTGCCCTTGCCCTCAATCAAGG
CAGCCACACCATGAAGACTCTGAGCCTCACTGCAGCAGGACTTCACACTGTTAATGGCATCCAT
CTTCGAGTACAGGGGCAGAGAAAATCCATACGAAGCACTAGTACATTGCCTCCTCGTCAATCTA
TTCCCCCCACATAGTCAACTCCACTCAGTTCTTTGATCTGTGACTTGTGAACATATATATTTGG
TTATTTCAGAATTTTGTGCATTGACACTTTCATATATGGCTTGCAATCTGTTCTTGAAATCGGT
TTTGTACTTTCATATGGCTAGCAACGTTGAATTTTTTATTGCTTTCACTGATTTCGGATAAATT
TTGTTTTCGCTTACTAGTTTGCATCATAAACCAAGATGTGATTTGTTTTTTGGTGAGTAGCCCC
ATGGCGACCCGTTTCTCCTGGCTGGTGCTGGGGAACAGGGCATTTTTAGGTGTCAGGGGACAGA
GGTGGGAGCTGTGCCCCCTGCCAGGGACAGTCCCATTACCATCCCTAATACTGGTGTTACTGCA
CATAAAATAGTGCTTGCACACGTGATAATTGTGCAAATTATAGTTCGTGTTAATAAAAACAAAA
AAACACTGATGAAAACTTCTTATGATCAGCACCTCATTCTGATCATGAAAATCGTATCAGTAAA
TTTCTCACAATTAGTTATTTCTTTCATAATTTTTACGAGCATTAGGTTTGCTAGAACAAAATGG
CAGTGTATACTGTTAGTGTACTACAGATCATCATCAACTATACCGTTAGAAGTAATCGATGTTC
GTTGTGCTTTAAGCAACGGTGACAAACAGAGTGGAATTTAAGAAACAGGTGCACAATACATGCC
TAACATGACTAACCTATTTTCAGGAACATACCTTGTTAATAAACAATGCCAACATATTAATTAG
TTTGTTCAAAATAACAGAAAACTACTTAAAGCAGTGCGACTGATATCTTACAGTATCAATCTTC
TTCAGCACAGACACTCCTGAATCCATGTCATAGTCGAAAACCGAGGGTGGGGTCCTCATTGAGC
TATAATGGAACCGAACAACAGATGAACCAAACTGTGATTGCTCAGGTTCCACGTCATATGCTGG
ATCAACAAAATCAATCTCCCGACCTCCCTGAAGTTGCCCAATTGGCTCTCCAGTGGCTGGTAGG
CGATACGCAGTAACTTTCGGTAGACCATTTTGACGTTCATATACAGCAATATGATTCTCAAAGA
GCTGGAAACTCTGTATTTTCACACTGGAAAGAGTTTTATAAGTTTTTAATGCAGCTGTAGTATG
CAGCCCTAATACACAACAGACCCATTGGTAAGAGAGCAAAGTACAAGAAAATATGCAGAATAAT
TTAAGTGAACAAGCAATGGTTGTGTAAAAGTTGTCCATTAGGCACTCTATCAGATGCAGCAAAT
TACATTTCTATATTGATAACATAGTTAAATTATTAAAAGTGCTTTCAGAGTGTACTTCTATCAG
ATGCAGTACAATACATTTCTATCTCGATTACATAATTTTAAATTCTTTTAAAAACAATTAGAGT
GTACTAGATAAAACACCCTGGAATTTTATTGCAAGAATTTCAAACTTCTAGCAAGATTCCTTAA
ACAAACAAACATAAATTCTATATAATTTCATCAGAATTCTTCTTGATCAGTGAACTTCCAAATA
GAAAAAGATCTATGTAGTGGCCGTGAGCTATCCTTGCAGTTTCGGTGTTCATACAGAAAAGTCA
GTTCTCTTATTTGAAATCCTGTCAGAAAATCAAGGCTAGTACAATCATATGTTTGCTTGTGAAT
TGTGATATACTGATATGAATTTGAAGACTTATGTGATATGTCTTATCTCTTATGCTATTGCTAG
CCCCTTTCTGAGTTGGATGGATGATGTCAAGTGAACAACTGTTATAATCCATCATTTCTGTATC
GGCCCCAAATTAGCAAATGACAAATAAATAAAAATAATATAGATCAAATCACCTCAAGAATGGA
GTTTCCACAATATATAAAATGTTCAAGAATGTGCTAGGCACTAGAGGGTCAGCAGGGCAATTGC
CTAGGGGCACCTAGGACTAACTCGACTAGTGAATTCCAAGTAATCAGGAAGCATATTACATAAA
AATTAGACAATTGAACACTAAAAAAGCAGAAGAGCCCCCAAGGCAGGTTAGCCACCTAAGCACC
ATCTAATGCCTAACTGCGATAACTAGGCGGCATCTAGGGCCTACTTTTTAGAACACCGTACACA
TTTTTTGTGTACTAGCTATATCTGAACATGTTCCATCAACCAAAAATATAATCTTAGAAGCTTA
AATGACAATTAGACTACCTTTCTCTGTGTGGTAGCAAGACAGTGGTCTCAGCTACATTATCCAA
TGGGCAAGCAATCAACTCAGAGTTGTAGAATTCCTCACTTCTCCTCTTAATATAGAAATGGTTT
CCACGATGACTGGCTGTTGTATCAATACCATAAACACAAGGAGTTAAAACCACAAGCTCCTTGC
TTTGTTTGGATATATCCAAGTAGAATATAAAGCTTGTGTTTTTGCTTCCAGATTCAACAAACAA
ATACTGCTTGCTTTCAGAAGTTTGGAGGCCAAGTGAAAACATGTCATCTTTTTCATGATACAAA
CAAATATCATCTGACTGATTAGACTCTAACATGTGCAACCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.214187958
Functional Information
Coding potential Y
Potential coding position 31142488-31139193(-)
31139236-31142482(-)
Potential amino acid sequence MLESNQSDDICLYHEKDDMFSLGLQTSESKQYLFVESGSKNTSFIFYLDISKQSKELVVLTPCV
YGIDTTASHRGNHFYIKRRSEEFYNSELIACPLDNVAETTVLLPHRESVKIQSFQLFENHIAVY
ERQNGLPKVTAYRLPATGEPIGQLQGGREIDFVDPAYDVEPEQSQFGSSVVRFHYSSMRTPPSV
FDYDMDSGVSVLKKIDTVLGGFDASNYVTERKWAAASDGTQIPMTILYRKDRVNLDGSDPMLLY
GYGSYEVWLHMLESNQSDDICLYHEKDDMFSLGLQTSESKQYLFVESGSKNTSFIFYLDISKQS
KELVVLTPCVYGIDTTASHRGNHFYIKRRSEEFYNSELIACPLDNVAETTVLLPHRESVKIQSF
QLFENHIAVYERQNGLPKVTAYRLPATGEPIGQLQGGREIDFVDPAYDVEPEQSQFGSSVVRFH
YSSMRTPPSVFDYDMDSGVSVLKKIDTVLGGFDASNYVTERKWAAASDGTQIPMTILYRKDRVN
LDGSDPMLLYGYGSYEVWLHMLESNQSDDICLYHEKDDMFSLGLQTSESKQYLFVESGSKNTSF
IFYLDISKQSKELVVLTPCVYGIDTTASHRGNHFYIKRRSEEFYNSELIACPLDNVAETTVLLP
HRESVKIQSFQLFENHIAVYERQNGLPKVTAYRLPATGEPIGQLQGGREIDFVDPAYDVEPEQS
QFGSSVVRFHYSSMRTPPSVFDYDMDSGVSVLKKIDTVLGGFDASNYVTERKWAAASDGTQIPM
TILYRKDRVNLDGSDPMLLYGYGSYEVWLHMLESNQSDDICLYHEKDDMFSLGLQTSESKQYLF
VESGSKNTSFIFYLDISKQSKELVVLTPCVYGIDTTASHRGNHFYIKRRSEEFYNSELIACPLD
NVAETTVLLPHRESVKIQSFQLFENHIAVYERQNGLPKVTAYRLPATGEPIGQLQGGREIDFVD
PAYDVEPEQSQFGSSVVRFHYSSMRTPPSVFDYDMDSGVSVLKKIDTVLGGFDASNYVTERKWA
AASDGTQIPMTILYRKDRVNLDGSDPMLLYGYGSYE(-)
MAQTQCCYMAMAPTRYGCTC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017