Detail information of AT2G04842_circ_g.8


General Information
CircRNA Name AT2G04842_circ_g.8
ID in PlantcircBase ath_circ_012819
Alias Ath_circ_FC1166
Organism Arabidpsis thaliana
Position chr2: 1700288-1700657  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G04842
Parent gene annotation Threonine--tRNA ligase, chloroplastic/mitochondrial 2
Parent gene strand -
Alternative splicing AT2G04842_circ_g.5 AT2G04842_circ_g.6 AT2G04842_circ_g.7
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04842.2:2
AT2G04842.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCAAAATCATAGTAGAAACCATTATCAATCCAAGGACCTATCGTCACTTTTGCATCCGGGAA
GAGTTTCTGAACTGCCATTGCCATTACATGCGCACAcgatatgataaacggtgatgggttcttc
cttaataccatccaaaatctccatcttataaggctcatttatcgccatgatccttttcttcgct
tcttctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGATATGATAAACGGTGATGGGTTCTTCCTTAATACCATCCAAAATCTCCATCTTATAAGGCTC
ATTTATCGCCATGATCCTTTTCTTCGCTTCTTCTCTAGATACTTCTTCTCTTAAAAGTGGTAAA
TTCCGACTAATGATACGATCCTACCAGATAAAGTACAAAGAAAACCATGAATACTCTTTTAAAT
TCTTCCCTCAAAGACTTTATCAGAAACTCACCATCTCTTTCTTGATCCTCTTAAGGTCTTTATC
TGTTAAAGGCTCCATATCAAAATCATAGTAGAAACCATTATCAATCCAAGGACCTATCGTCACT
TTTGCATCCGGGAAGAGTTTCTGAACTGCCATTGCCATTACATGCGCACA
Conservation Information
Conserved circRNAs NA
PMCS 0.343186399
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a