Detail information of AT2G04842_circ_g.6


General Information
CircRNA Name AT2G04842_circ_g.6
ID in PlantcircBase ath_circ_012817
Alias 2:1699932-1700657
Organism Arabidpsis thaliana
Position chr2: 1699932-1700657  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04842
Parent gene annotation Threonine--tRNA ligase, chloroplastic/mitochondrial 2
Parent gene strand -
Alternative splicing AT2G04842_circ_g.5 AT2G04842_circ_g.7 AT2G04842_circ_g.8
Support reads 1/1
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04842.2:3
AT2G04842.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCAAAATCATAGTAGAAACCATTATCAATCCAAGGACCTATCGTCACTTTTGCATCCGGGAA
GAGTTTCTGAACTGCCATTGCCATTACATGCGCACActggatagaaaacagatcaaggtcttgg
ccgatgcgtctatgatccctgcgtttagcttcttctttaaaatgaagatatgctttcagttgct
cttcgctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 549
Transcript exons: 1699932-1700185,1700288-1700435,1700511-1700657
CTGGATAGAAAACAGATCAAGGTCTTGGCCGATGCGTCTATGATCCCTGCGTTTAGCTTCTTCT
TTAAAATGAAGATATGCTTTCAGTTGCTCTTCGCTCTCCCAAGCTGTTCCGTATATCCTCTGAA
GCATTTGCCTCTTTTCATCTCCTCTCCAGTATGCACCAGCAACAGATTCTAGTTCAACTGCTTT
CTTGTTTATCTTCCCTGTGGTCTCGACATGAGGACCCGCACAAAGATCCCACCATTCATTACCG
ATATGATAAACGGTGATGGGTTCTTCCTTAATACCATCCAAAATCTCCATCTTATAAGGCTCAT
TTATCGCCATGATCCTTTTCTTCGCTTCTTCTCTAGATACTTCTTCTCTTAAAAGTGGTAAATT
CCGACTAATGATACGATCCATCTCTTTCTTGATCCTCTTAAGGTCTTTATCTGTTAAAGGCTCC
ATATCAAAATCATAGTAGAAACCATTATCAATCCAAGGACCTATCGTCACTTTTGCATCCGGGA
AGAGTTTCTGAACTGCCATTGCCATTACATGCGCACA

Genomic sequence CTGGATAGAAAACAGATCAAGGTCTTGGCCGATGCGTCTATGATCCCTGCGTTTAGCTTCTTCT
TTAAAATGAAGATATGCTTTCAGTTGCTCTTCGCTCTCCCAAGCTGTTCCGTATATCCTCTGAA
GCATTTGCCTCTTTTCATCTCCTCTCCAGTATGCACCAGCAACAGATTCTAGTTCAACTGCTTT
CTTGTTTATCTTCCCTGTGGTCTCGACATGAGGACCCGCACAAAGATCCCACCATTCATTACCT
AGATGGGCATTCGAACTGGCATAAGATGGAGACAAGCTATTACCAAACTTAATACGAACAAATT
ACAGAACTGAAAAGCAAGCAGGAGGCTACAGCGTACCGATATGATAAACGGTGATGGGTTCTTC
CTTAATACCATCCAAAATCTCCATCTTATAAGGCTCATTTATCGCCATGATCCTTTTCTTCGCT
TCTTCTCTAGATACTTCTTCTCTTAAAAGTGGTAAATTCCGACTAATGATACGATCCTACCAGA
TAAAGTACAAAGAAAACCATGAATACTCTTTTAAATTCTTCCCTCAAAGACTTTATCAGAAACT
CACCATCTCTTTCTTGATCCTCTTAAGGTCTTTATCTGTTAAAGGCTCCATATCAAAATCATAG
TAGAAACCATTATCAATCCAAGGACCTATCGTCACTTTTGCATCCGGGAAGAGTTTCTGAACTG
CCATTGCCATTACATGCGCACA
Conservation Information
Conserved circRNAs NA
PMCS 0.535678554
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020