Detail information of Zm00001d044648_circ_g.1


General Information
CircRNA Name Zm00001d044648_circ_g.1
ID in PlantcircBase zma_circ_001605
Alias circ1825
Organism Zea mays
Position chr3: 233939602-233944170  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d044648
Parent gene annotation Alpha-L-arabinofuranosidase 1
Parent gene strand -
Alternative splicing Zm00001d044648_circ_g.2 Zm00001d044648_circ_g.3 Zm00001d044648_circ_g.4 Zm00001d044648_circ_g.5 Zm00001d044648_circ_g.6 Zm00001d044648_circ_g.7 Zm00001d044648_circ_g.8 Zm00001d044648_circ_g.9 Zm00001d044648_circ_g.10
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TG
Number of exons covered Zm00001d044648_T003:11
Zm00001d044648_T005:11
Zm00001d044648_T001:11
Zm00001d044648_T006:3
Zm00001d044648_T002:11
Zm00001d044648_T004:11
Zm00001d044648_T007:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCATGGCGCCGCTTGACTCGCGGAAAATCGTCTGCATCCAGTAGCTAGGAGTTCCATAGTGT
TGCCAGGAGTTGAAGACAATAGCGTCCGGGTTCCACccttcactctcaggaagctattctctgc
atcctgccacgtgatcgcagacgcggccagcgaactcgagtaccgggaactgatattaaccgga
tggatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACTCTCAGGAAGCTATTCTCTGCATCCTGCCACGTGATCGCAGACGCGGCCAGCGAACT
CGAGTACCGGGAACTGATATTAACCGGATGGATCATGGCACCGCTTGACTCGCGGAAAATCGTC
TGCATCCAGTAGCTAGGAGTTCCATAGTGCTGCCAGGAGTTGAAGACGATAGCGTCCGGGTTCC
ACCTGATCTCGTTTTGTTCGAAACAAAATCATCGCAGCGTTAGAGCAACGGGAAAAGAACAAGT
AGAGGGTAAAAAAAAACCAAGAATACTAACGTTTGGTCATTGTCGTTCACGAAGAGTGGAGCGT
AACTTGCCATCTGAACGATATCACTGCAAAAAGGTCATCTAACTCACAGTAAAGACTATCCTTG
GTAGTAGTAGAACCCCAAGCCCGCCAACGAAAATAAGGATCAGATGAACCAACTTGCAACCAAA
AGGAGAGATCACCTGTTCTTCTCCAGACCAGTGAGGAAAGCAGCTTCAGCCAACGAAGCAAGAA
GACTGCCTCTACCCGCGTCACTTCTCCAGACAGCGTACTCGCTCACAAAAGCCTGTGTTCGAAT
CATTTCAGCAACATTTTTACTGTATGGACAGGGTACTGGTGATGTCATAAATAAGCAAGAAAAT
CACTGGAGCTTCAGGGTCTTCAGAGAAACATGCAAATAGAACCACACGTCACATAAGCTCCCTA
TGAGTATTCCTCATCGTTATACAGAATCACAACACCTCGGAGAATTGTACCCTCCATCTCTTAA
GGATTTTGCAAAGCATCAAAGGACCCATTTTTTTATATACTACCCAAAGAACATCACAAGTGAA
TGCCAGGAATCCCTGATCGATGTAAATGACTGGTCGTGAAAGAGGGCTGTCTCATAAGAGTCCT
TGTGAAAATGAGACTTAAGACTTACCTTAGGTCCACTACGAGATGTTCTGTCAAATGTGCTCCT
CATGTTAAACAAAGTCTTAGAATCAGTATAGACCTAAGAGAAAGAAGCACTGGTTAAATTTAAG
AGAAGGCAAGCTGACCTTGACATCGAATAATTAGACAGAACCACAGAATCAAGGCAGAGAAAAA
AATGAAACAAACAGACTTGGCAGTAAGGACTTTACATGGAAATCATACAAATCCGCAGGATGGT
CAAGTGGTCTAGATGAACCATCACAGTTTGAAATCATCTGAATGTCTGGATAGGCCTCTCTTAT
AGCATTGTAGAATTTGAGGTAATTACCTGTTTAACAGACATAAAGACTATCATTCCATGCAACT
AAAAGCAGGCTTAATATGTACAAAAAAAATGTAGGTGAAGTATTTCCTTTGTCGACTTCCACTG
GGAGTTATGTTCAGTTTAAAGTCTCTTTGCTAGTACAGAGACATCAAGTACATAATTGCCACTG
TGCTGAAGACCCCTTTTTTTTTACGAAACTTGTGGAGAAGACATTTTCAACTTATTTAAAGGAA
GCAAATACAAATGTAGTTGATAAGTTTACCACGGTAGAACTTTTTCCCGCAATCTTCATTTCCA
ATTGCGACATGTTTGACCAGGAAAGGTTCAGGGTGCCCCATTGCAGCCCTAACAGAGCCCCATG
TTGAATCTGCACTCCCCCTTGCAAATTCCAGACTGTCCAATACATCCTGTAGAAAACAAACAGT
TCAATAAAATTAAAGGTAGAAGAATTATAAGTATAAGAATTACCTAAGTCAATAGGAGATAATG
GTATCTTATTGAGTCTGTTACTATTCATATAAACAGAATTAATTAGTTCATGGACAATCTTGGT
AAAGGTGAGCGTATAACTCAAGTTAAGCGTCATCTCGGCATGTGAACTACCTGAATGAAAAGTA
AAGGGTCACCCACTACTGTTATATCTTTTTCAGCATTCATGAAGACAACTAAAAGAGAATAAAA
CTTCAGCATTATTCAAAACTGATAATATGTGTTGCTTTTTTTATGGGGTGTGGGGTGTCCCCGA
GTGTGCAGTGCCTTCTTCAGGACATCGAGGAGGCAGATGTGTGGTGTAAGGCAGGTGCTTCAGG
CCTGCGTGTCATCTGGCCTCCTTAGGTTTTTTAGTGTGGTGGTTGTTGAGTTGAGTTCTTCCTA
ACGAATGTTTTTCTGTATCTTCGTTTGTGGCCACTGTGAGGTGGTGCTTCTATACTGACCTACT
TTGGTCCTTATTTCTTTCTTCTTAATATAAATATACACAGCTCTTCTGCGTGTTCGATAAAAAA
ATGTGATGGTTCTCACTGTTATCTGAGCAATAAAGTTTTAATCTTTTTTTTTCTCAGATACACA
GGATTTGTATTAACGAATAAGTTCTAATCTTGGATATGGTTTGTAGCTAAAAAAAAAGACAAAT
GATATTATAATATCTAAGTATTTATTTACAATGGTAATTTGCACCCATGGCTGAGAAAGTACAA
CACATTAAAAAAATGAAGGTCCTTATATCATTATATCAATAAATTTTCAAGGCTGCTTAGTCTA
CTCGAGGTATAACTAGGGAGCTAAAAAGATACCTTTACAAAAGGGGCAATAGCTACAGTATCAA
CTTCATCATTGTGGCTTATTCCTGAGTTATAAGAGAGAAATTCCATCAGTTTAGAAGCCCCGTG
TTGATAAAAGATTTAACAAATCTGAAAACAATTACCATTGTTGAATACCCATATTGGGGCAGCA
CCCAGGTCCTCCGCAAGCTTTGACGTAGATTTCAATATAATACTTAGGGGGTCATGATAGGAAA
GAAAAATAAATAAAGTGAAGCAGTGTAAACTGGTACCTGAAGGAACTCATAATATCCAAGCCCA
TCATCAGTCCAGTAATGCCAAACATCCCCGAAGTGTCCAGGCCTCTCTTCCCATGGACCAATTG
ATTCTCTCCATCTGAATGCATTTCTTAGCCAGTCACCTTCTACAAAACAACCTCCTACAGTAGT
CGCATGGAATCTATCAAATATCTGAAACATCTATGAACACGTAATATATGTCCAAACATGAAGA
ACTTGATTTTAAATGTGAAAACACAGTGCATACCAGGAAACCTCAAGAATCGTGGTTTCAAATC
CAAAAGCATGGATATAAGTTCTGTGCGGAAACCATGTCCCTGTGTGTACAGAGAGAACCAGCTA
TAAATATTCAGGTAAAGTTTTGCACAGTGAGAATTACCATACACTAGAAAGAGATTGTTTTTGT
TTCTAGGTCTTTGGCAAGATAAATGAATCTAATACATTTGGTACACTAAATAGATAGCTAACAT
ATAAATTCAGACACACAGGGTATCCATCAGAAACAATTAATTGGTGGTTACACTCATCAAACAA
ACCAAAGCAGTGAACTGGGTGCCATACCATCCTTGTATTGTGGTTACTGATCATCTCATCCTTA
TAAGCTGGCTGCTGGCCACTTATCACCAGCCACCATTAACACAAGATAATTTTTAAGACGAAGA
AACCTCTTAAGCATCTCTTAAGCATTACAATATGTCAATATGTGATGGAAACATTGTACCGGCA
GCAGCAAGAAACTTGCGGTCAGTATACTCATTAAACATTGACAGCCACATACCGTGATTCATGA
TAAAGTTCTTTACCATGAAGGCATCCATCGACAATTTGTTTAATCCACAGGAGGCTGTCGTTCT
CACCATCAATGTACCATCATCCCGTACAGTAGATGGTGATGAACATGCAAAGCAAACACGTACA
GGAGAAAGGAAACCAACCAACACCAAGCAAAAACCTGATGTGGTTTTTATTTCATGAAGCAACA
GTACGTAGTACGTTATCCTGTATCGTGGTACACCAGTACAAAGCCTTTTTTATCGATCAAGATC
GCTAACAGCACACCACACTCCACACCCTCTGGTTGCTGCCATCCGCGCGCTGTTTGTGTACTGT
AATGTGCAGCACACACATCATATCTCCGCCACAAGCTTGGGCTCAGCCAGCGCCAGATCGAAGG
CGGTGAAGGAGTGAGGAGCCAGCGTGACCTGCATCTGCTCCGCGGCGTTGCTCAGCTGGCTTTT
CACCGGCGCAACCTGCAAGCAGCAAGCTTTGGGGTTCAGAACAAGCTCCACACGTCGCTCCTTC
CATTCAGAAACCAACAAGCTTAGTGCATGCATGGACCATCGGTACGCATACCTTGTTCGGGTTA
CTGAAGGAGTTCTCGTCCATGACGTTGCCAGACGTGAGGACGGTGGCGGTTGATCCCAGCGCGT
TGACGCTGGCCCCGAGTCCGCTCGTGGAGACCGTGAGGTTAACGGTGTCCGACCCGAAGTTCAC
GACCTGCACAGCAGAAGCCACTTGAGAACGAAACACCTTTAGCCGCGCAGGCTAGGACGGATGC
GATGCGACAGACTCTACTACTTGCCTTCACTCTCAGGAAGCTATTCTCTGCATCCTGCCACGTG
ATCGCAGACGCGGCCAGCGAACTCGAGTACCGGGAACTGATATTAACCGGATGAATCATGGCGC
CGCTTGACTCGCGGAAAATCGTCTGCATCCAGTAGCTAGGAGTTCCATAGTGTTGCCAGGAGTT
GAAGACAATAGCGTCCGGGTTCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.010253626
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b