Detail information of 1_circ_ag.5


General Information
CircRNA Name 1_circ_ag.5
ID in PlantcircBase ath_circ_006847
Alias At_ciR95
Organism Arabidpsis thaliana
Position chr1: 19200811-19205777  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G51760_circ_g.3 1_circ_ag.4
Support reads 74/30
Tissues leaf/leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCCTCAATTCGCCATAGATCCAGTATTGGCAGCTTCAAATGTTATTCTGAGCTTACAACAC
CTCGTTTCACGAGAGGCAGATCCTTTAGACTCGCAGgtggttacagttgctaaatttgaaggcg
gtggtgctttcaatgtgattcctgactctgttactatcggtggtacattccgagctttttcaac
taaaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTTACAGTTGCTAAATTTGAAGGCGGTGGTGCTTTCAATGTGATTCCTGACTCTGTTACTA
TCGGTGGTACATTCCGAGCTTTTTCAACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCA
GGTCAGTAACTTTACCCTCTGATGTGTAAACTTTTGTCTTACCGAACTGTTTTAACTCTCTTTG
CAAATCCAATGTTTCAGGTTATCACAAGGCAAGCGAGCGTGAATATGTGTAATGCAACAGTGGA
TTTCATTGAAGAGGAGAAACCTTTTTTCCCACCAACTGTAAATGACAAAGCCTTACACCAGTTT
TTCAAGAACGTTTCAGGCGATATGTTAGGGATTGAGAATTACGTCGAGATGCAACCATTAATGG
GATCAGAAGATTTCTCTTTCTACCAACAAGCAATCCCGGGACATTTTAGCTTCGTTGGAATGCA
AAACAAAGCTCGTTCACCAATGGCGAGCCCTCACTCGCCGTACTTTGAAGTTAACGAAGAATTA
CTACCTTATGGTGCTTCCCTTCATGCTTCCATGGCCACAAGATATCTTCTTGAACTAAAAGCTT
CAACTCTAAATAAGAGTAACAAAAAAGATGAACTTTGATGCCAACAAACATTGGCTTCTCCTAT
TCTTCTACTCTGAAAAATGTCAAAACATGGTAACAGTTTTTTCTTTTTTACAGAGCCTGCCATG
TAAAGATTAATAAATTGTTATGCAGTGTCAAGCTTCTATTAAATCCAAGAAATGTTATTACTGC
AAACAAAAACAGATTTGGGCCATTGCAATGAGAGAGCTGAAACGGTCAATTTAAACAAATCAGA
TTGAGAGATTTCAGAAGATTCGACGCATAAACAAATGCTAAAATTCGAGAGCTTGTTAACATGT
CTAACTGATAAAGATTCAATTTTTCTTTCTTGTTTTTTCTTCTTCTTCTTTAGATTCAAGTTCT
GATCTTTGCTTCTTTGAAAATCACAAATCTTTTCTTCTGGGTTTCTATAAAAAACCCATTTTTT
GTTGTTGTCGTACAAACATTTCCCGTAAAGATTGGATTTTTGTGTAAGCATTTGAAGATAGCTA
AGAAAGTGAGAAGCTTTTAGATGAAAGTGATGGTAATGGAGATGGAGGAATGTGTTAAAGAAAA
TGGTTCATCAACACCTAAATCTAGAGTCACAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTG
CTTCAGATTCTGTTATTGTTTCTTGTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGA
TCAAGTTTTTGAAGATTCAACGTTTAGATCCTGTGGCTCCAATTACTTTGCTCTCTACGTATAA
TCATGAGAGTGTTACTTTAGATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACACAATGAAT
GATAGTGAATTGCTTTGGCGTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTG
TCCCTAAATTGGCTTTCATGTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAA
GTTCTGTAAAGGACATGAGGGTCTTTATTCTATCTATGTTCATTCGTTGCCTAGTTACAAATCG
GATTTTTCGAGGTCGTCTGTGTTTTACAGAAGATATATCCCTAGTCAGGTACTGTCATTGATGT
TTCAGAGGAAAATCTTGTTTTGTGTTTGTTTCTTGTGTTCTCACAGTATTAGTTTCTTCTGTGT
TATAGGCTGTGGCATGGGGAGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGC
GTTGCTTGATATCTCTAATGAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGT
TTCAGCTTTATCTATAGTTATGTCTCTGAATCAAGATATAGTTTTATGGGTGCTGCTGATGAGG
AAGGACCTGATGGAAGAGGCAGATACAGGACAGAAATGGAACCTGAGATCACACTAAGCCAGTG
GCGAAAAGGGTCTCAGTGGTTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAAGACACT
ACTTACTATCCCAAATTCAAAGAGTTTTGTAGACCTCCATGCTATGTAGATGAACATTACTTCC
CAACAATGTTGTCTATGAAACATCGGGTTTTGCTTGCTAATAGGACATTGACATGGACAGATTG
GTCACGTGGTGGTGCTCATCCAGCTACTTTTGGTAAGGCTGATGTAACGGAAAGTTTTCTCAAG
AAGCTTACAGGAGCCAAATCTTGCCTCTACAATGATCATCAGTCTCAAATCTGTTATCTCTTTG
CCAGAAAGTTTGCTCCAAGCGCATTGGAGCCTTTACTGCAACTTGCACCCAAGATTCTTGAGTT
AGGCTCTAACATATCTTCCACTCGTCACTCTTGGTATTTGTTTTGAGAAGTTCTTGAGTTTAGA
GTATGATCATGGACCGAACTGATCATTAGTTAATCTCCTCTTTCACAATGATATTACAGGTATT
GTGAAGGTTAAACATATTTTTTGACATGACAGATTATTGAATAAAGGGAGTTTTGAGTTCTTTT
CAGCCCCTAGGAGCATCCGTTACTCTTGTTCTATGTTTAGAAGTCGAAAAATTACTCGTTTTTT
AAAGAAGAGTAAAGGCATTTTCTTCTAAATGTTGTTGTGTTGGCATGTTTCATTTGCATTTTCT
CATGGTATCAAGGAAAAGTGATTGCAATTAGAGGGATCAAAAACTATAAAATTTGGAATTGTTT
TTGCAAAAACTATGCATGAGACTGAACTTTTGGATTTAAGGGATAAAAAACTATAAAATACCAA
ATCCAAAAGTTCAGTCTCATTTAAAACAATTAAGAACCCAAAATAACCCATTTAAAGCAACAAA
AGAAAAAAGAGAGTAGCCCAATAGGCCCATGTTGTTAATTAAACAACTTATGCGGCGCATAACG
GATGATTCTACGATCAAAACTGGAAATAGATGCCCATAAAATTACGAAGAAAATCATGTGCCTA
AAGCATATATGAGCTTTAGCTGCTTCAGGTCAGAGCCGGCTCTGATTGCTAGCATTTTAAACCA
ATCACGGAAATGGTTCGGCAAAATGTTTCTATTTTATTTAATGTATTTATTTTAAATACGGAAA
TAAATTTTATGAAAGAATCCATCAAACACGTTATAGCCGTGCTTTATAGCTATTTGTAGCAAGA
GCAAATGTACCACACCACACCGTCCAACAACTACAACCGTTCAATTTCTAGTTCTTTTTTCTTC
ACGTGTCACGAAAACTTGAAATGAAAACGAAATGATTTTCCAAACAAAAGAGGAAAGATCTTGC
AAATCAGATAACTCGAAACTTTTATTTACGGTGTATCTTCTAAACAATCCTTTAAATTTCATTT
TATAATTTAATTACTTTGCAAACAAGCAGATTTACATTTTAACCGAAAATACAATTAATGTCTT
AGGTTCAACTTCACGGTGAAATATGTTCCACATGTTTATTGGGTTCAAACTCGAACCGATATTT
ATTGAGCGCTTAAAATGAAATATTTAAATTCTGTCCAACGTCAAAATAATTTGAGATACTAACA
AGAAACCTTCGGTAGTTGATGGTAATCAATTTGGAAAAGAATATATTTTATGGTGACTTGGGAC
CGAAGAAAATTACAAAAGATATGAAGATTTTTATTAAGTTTCCGTGTTGTATTTCGCTTGCTAT
TATGTGAGTTCTTGGTTATAAATGCCGCTTCTTCCTTCATGGTTTCTTACTTCATCATCACGCA
ATCTCTTGATTCACGATGAGTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTACTAA
ACTCGTGTCTGATTTCATGTTCCTCGAATGATTTGTCTCAAATTCCTAAAAATTTCCTTAGTCT
AGCTAAAAGAGAAGATTTTTTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCA
GAGTTAGGTTACGAGGAAGTAGAGACATCTAAGCTAGTCAAGACAGAATTGGACAAGATGGGTG
TGTCTTATAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGGCCATGCCCC
CTTTGTTGCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGGTATAATAAGGTTTTCATTTA
CAAAGTTTTTGAATCTATTCCCTTCAAGCCCAAATTATTTAATCACTGATCATATTTTGCTAGT
CGAAATGGTGTCATGTTTTAAATTTGTTTTTTTTCTGAATATTTGTTTTAGTACAACAAACAAT
ACTAACTGGCATTTAAGATATAACCATTATCATTTGACTTATGGATCAGATTTCTTATGTGATT
TTAAATTACTTGAGTTGCAAGCTAGTGGATTCTTATTGAACATGGTAATGATGGAATTGTGTAG
GAAATGGTGGAATGGGAACACAAGAGTAAGATTCCAGGGAAGATGCACGCTTGCGGACATGACG
CTCACACTACGATGCTCCTCGGTGCTGCAAAGTTGCTCAAAGAACACCAAGAAGAGCTACAGGT
TTAGTATTGTATTGTGCTGTATTTTTTAGCTAATAACATTTTCAAACTGTTGCAATCATCAGGT
TGTTTGGTTTCTTATTAACACTTGTTGGACATTTTATTCATCATGGTACAGTGATTCTGGTTTT
CCAACCAGCTGAGGAAGGAGGAGCAGGTGCAAAGAAAATCGTGGAGGCTGGAGTATTGGAGAAT
GTGGGTGCAATCTTTGGATTACATGTTTCGAATCTATTGGGATTAGGTCAACTGAGCTCAAGAG
AGGGTCTATTGATGGCTGGTAGTGGACGTTTCAAAGCTACGATAAGCGGGAAAGGAGGTCATGC
AGCTCTTCCTCAATTCGCCATAGATCCAGTATTGGCAGCTTCAAATGTTATTCTGAGCTTACAA
CACCTCGTTTCACGAGAGGCAGATCCTTTAGACTCGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.61357957
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017