Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_006844
Alias At_ciR88
Organism Arabidpsis thaliana
Position chr1: 19200190-19204949  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G51760_circ_g.3 1_circ_ag.4 1_circ_ag.5
Support reads 81/3
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGAATCCAGTTGCTGTAACTGGTGTTATTGGATATGTTGGAACTGGCCATGCCCCCTTTGTT
GCTTTGAGGGCTGATATGGATGCACTTCCTATTCAGgaaatggtggaatgggaacacaagagta
aggttccagggaagatgcacgcttgtggacatgacgctcacactacgatgcttctcggtgctgc
aaaattgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATGGTGGAATGGGAACACAAGAGTAAGGTTCCAGGGAAGATGCACGCTTGTGGACATGACG
CTCACACTACGATGCTTCTCGGTGCTGCAAAATTGCTCAAAGAACATGAAGAAGAGCTACAGGT
TTAGTTTTGACACTGGATTTTCCTAGTTTTAAAATTTGAGTCTGTCGAAATCATCATGATGTTT
GGATTCTTGAAACTTGTTGGACATTTTCTTGATCAGGGCACAGTGGTTCTAGTTTTCCAACCAG
CTGAGGAAGGAGGAGGAGGTGCAAAGAAGATTGTGGAGGCTGGAGTGTTGGAGAATGTGAGTGC
AATCTTTGGATTACATGTCACAAATCAATTGGCATTAGGTCAAGTGAGCTCGAGAGAGGGTCCT
ATGTTGGCTGGTAGTGGCTTTTTCAAAGCTAAGATAAGCGGGAAAGGAGGCCACGCAGCTCTTC
CGCAGCATACCATAGATCCGATACTGGCAGCTTCAAATGTTATTGTTAGCTTACAACACCTCGT
TTCACGAGAGGCAGATCCTTTAGACTCTCAGGTAATAAATATAATCTTTGGCTCTTCAAATGTC
TCTATATAGCATGTGGATTGATTTTATCTATGCGAGTGCTTACAGGTGGTTACAGTTGCTAAAT
TTGAAGGCGGTGGTGCTTTCAATGTGATTCCTGACTCTGTTACTATCGGTGGTACATTCCGAGC
TTTTTCAACTAAAAGCTTTATGCAACTCAAGAAAAGAATTGAGCAGGTCAGTAACTTTACCCTC
TGATGTGTAAACTTTTGTCTTACCGAACTGTTTTAACTCTCTTTGCAAATCCAATGTTTCAGGT
TATCACAAGGCAAGCGAGCGTGAATATGTGTAATGCAACAGTGGATTTCATTGAAGAGGAGAAA
CCTTTTTTCCCACCAACTGTAAATGACAAAGCCTTACACCAGTTTTTCAAGAACGTTTCAGGCG
ATATGTTAGGGATTGAGAATTACGTCGAGATGCAACCATTAATGGGATCAGAAGATTTCTCTTT
CTACCAACAAGCAATCCCGGGACATTTTAGCTTCGTTGGAATGCAAAACAAAGCTCGTTCACCA
ATGGCGAGCCCTCACTCGCCGTACTTTGAAGTTAACGAAGAATTACTACCTTATGGTGCTTCCC
TTCATGCTTCCATGGCCACAAGATATCTTCTTGAACTAAAAGCTTCAACTCTAAATAAGAGTAA
CAAAAAAGATGAACTTTGATGCCAACAAACATTGGCTTCTCCTATTCTTCTACTCTGAAAAATG
TCAAAACATGGTAACAGTTTTTTCTTTTTTACAGAGCCTGCCATGTAAAGATTAATAAATTGTT
ATGCAGTGTCAAGCTTCTATTAAATCCAAGAAATGTTATTACTGCAAACAAAAACAGATTTGGG
CCATTGCAATGAGAGAGCTGAAACGGTCAATTTAAACAAATCAGATTGAGAGATTTCAGAAGAT
TCGACGCATAAACAAATGCTAAAATTCGAGAGCTTGTTAACATGTCTAACTGATAAAGATTCAA
TTTTTCTTTCTTGTTTTTTCTTCTTCTTCTTTAGATTCAAGTTCTGATCTTTGCTTCTTTGAAA
ATCACAAATCTTTTCTTCTGGGTTTCTATAAAAAACCCATTTTTTGTTGTTGTCGTACAAACAT
TTCCCGTAAAGATTGGATTTTTGTGTAAGCATTTGAAGATAGCTAAGAAAGTGAGAAGCTTTTA
GATGAAAGTGATGGTAATGGAGATGGAGGAATGTGTTAAAGAAAATGGTTCATCAACACCTAAA
TCTAGAGTCACAAACCAATCTAGAGCTCTCTTACCGTTGCGTCTGCTTCAGATTCTGTTATTGT
TTCTTGTTTTGACTCTTGGGATCTCTGTTGTTAGTATACACATGATCAAGTTTTTGAAGATTCA
ACGTTTAGATCCTGTGGCTCCAATTACTTTGCTCTCTACGTATAATCATGAGAGTGTTACTTTA
GATAGCTTTATTAGACCTCCTTCCAATGTTTGGCACACAATGAATGATAGTGAATTGCTTTGGC
GTGCTTCTATAGAGCCGCAAAGAAATGGTTATCCGTTTAGACGTGTCCCTAAATTGGCTTTCAT
GTTTCTTGCCAAAGGTCCTTTACCATTTGCTCCACTTTGGGAGAAGTTCTGTAAAGGACATGAG
GGTCTTTATTCTATCTATGTTCATTCGTTGCCTAGTTACAAATCGGATTTTTCGAGGTCGTCTG
TGTTTTACAGAAGATATATCCCTAGTCAGGTACTGTCATTGATGTTTCAGAGGAAAATCTTGTT
TTGTGTTTGTTTCTTGTGTTCTCACAGTATTAGTTTCTTCTGTGTTATAGGCTGTGGCATGGGG
AGAGATGAGTATGGGTGAAGCAGAGAGGAGGCTTTTGGCTAATGCGTTGCTTGATATCTCTAAT
GAATGGTTTGTTCTGCTGTCTGAATCATGCATTCCTCTGCGAGGTTTCAGCTTTATCTATAGTT
ATGTCTCTGAATCAAGATATAGTTTTATGGGTGCTGCTGATGAGGAAGGACCTGATGGAAGAGG
CAGATACAGGACAGAAATGGAACCTGAGATCACACTAAGCCAGTGGCGAAAAGGGTCTCAGTGG
TTTGAAATTAACCGGAAACTCGCTGTTGAGATTGTTCAAGACACTACTTACTATCCCAAATTCA
AAGAGTTTTGTAGACCTCCATGCTATGTAGATGAACATTACTTCCCAACAATGTTGTCTATGAA
ACATCGGGTTTTGCTTGCTAATAGGACATTGACATGGACAGATTGGTCACGTGGTGGTGCTCAT
CCAGCTACTTTTGGTAAGGCTGATGTAACGGAAAGTTTTCTCAAGAAGCTTACAGGAGCCAAAT
CTTGCCTCTACAATGATCATCAGTCTCAAATCTGTTATCTCTTTGCCAGAAAGTTTGCTCCAAG
CGCATTGGAGCCTTTACTGCAACTTGCACCCAAGATTCTTGAGTTAGGCTCTAACATATCTTCC
ACTCGTCACTCTTGGTATTTGTTTTGAGAAGTTCTTGAGTTTAGAGTATGATCATGGACCGAAC
TGATCATTAGTTAATCTCCTCTTTCACAATGATATTACAGGTATTGTGAAGGTTAAACATATTT
TTTGACATGACAGATTATTGAATAAAGGGAGTTTTGAGTTCTTTTCAGCCCCTAGGAGCATCCG
TTACTCTTGTTCTATGTTTAGAAGTCGAAAAATTACTCGTTTTTTAAAGAAGAGTAAAGGCATT
TTCTTCTAAATGTTGTTGTGTTGGCATGTTTCATTTGCATTTTCTCATGGTATCAAGGAAAAGT
GATTGCAATTAGAGGGATCAAAAACTATAAAATTTGGAATTGTTTTTGCAAAAACTATGCATGA
GACTGAACTTTTGGATTTAAGGGATAAAAAACTATAAAATACCAAATCCAAAAGTTCAGTCTCA
TTTAAAACAATTAAGAACCCAAAATAACCCATTTAAAGCAACAAAAGAAAAAAGAGAGTAGCCC
AATAGGCCCATGTTGTTAATTAAACAACTTATGCGGCGCATAACGGATGATTCTACGATCAAAA
CTGGAAATAGATGCCCATAAAATTACGAAGAAAATCATGTGCCTAAAGCATATATGAGCTTTAG
CTGCTTCAGGTCAGAGCCGGCTCTGATTGCTAGCATTTTAAACCAATCACGGAAATGGTTCGGC
AAAATGTTTCTATTTTATTTAATGTATTTATTTTAAATACGGAAATAAATTTTATGAAAGAATC
CATCAAACACGTTATAGCCGTGCTTTATAGCTATTTGTAGCAAGAGCAAATGTACCACACCACA
CCGTCCAACAACTACAACCGTTCAATTTCTAGTTCTTTTTTCTTCACGTGTCACGAAAACTTGA
AATGAAAACGAAATGATTTTCCAAACAAAAGAGGAAAGATCTTGCAAATCAGATAACTCGAAAC
TTTTATTTACGGTGTATCTTCTAAACAATCCTTTAAATTTCATTTTATAATTTAATTACTTTGC
AAACAAGCAGATTTACATTTTAACCGAAAATACAATTAATGTCTTAGGTTCAACTTCACGGTGA
AATATGTTCCACATGTTTATTGGGTTCAAACTCGAACCGATATTTATTGAGCGCTTAAAATGAA
ATATTTAAATTCTGTCCAACGTCAAAATAATTTGAGATACTAACAAGAAACCTTCGGTAGTTGA
TGGTAATCAATTTGGAAAAGAATATATTTTATGGTGACTTGGGACCGAAGAAAATTACAAAAGA
TATGAAGATTTTTATTAAGTTTCCGTGTTGTATTTCGCTTGCTATTATGTGAGTTCTTGGTTAT
AAATGCCGCTTCTTCCTTCATGGTTTCTTACTTCATCATCACGCAATCTCTTGATTCACGATGA
GTTTCTGCAAATTGGTTTCTTTTGTTTTGATCCTTCACTTACTAAACTCGTGTCTGATTTCATG
TTCCTCGAATGATTTGTCTCAAATTCCTAAAAATTTCCTTAGTCTAGCTAAAAGAGAAGATTTT
TTCGATTGGATGGTTGGAATAAGAAGGAGGATCCACGAGAACCCAGAGTTAGGTTACGAGGAAG
TAGAGACATCTAAGCTAGTCAAGACAGAATTGGACAAGATGGGTGTGTCTTATAAGAATCCAGT
TGCTGTAACTGGTGTTATTGGATATGTTGGAACTGGCCATGCCCCCTTTGTTGCTTTGAGGGCT
GATATGGATGCACTTCCTATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.568007384
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017