Plant Circular RNA Database

Detail information of Os03g0344700_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os03g0344700_circ_g.5
					
						ID in PlantcircBase
						osa_circ_019751
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 12842359-12844325  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0344700						
					
						Parent gene annotation
						
							Similar to AAA-type ATPase family protein. (Os03t0344700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0344700_circ_igg.1 Os03g0344700_circ_g.2 Os03g0344700_circ_g.3 Os03g0344700_circ_g.4 Os03g0344700_circ_igg.6 Os03g0344700_circ_g.7 Os03g0344700_circ_igg.8 Os03g0344700_circ_g.9 Os03g0344700_circ_g.10 Os03g0344700_circ_g.11 Os03g0344700_circ_g.12 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0344700-01:8

General Information
CircRNA Name	Os03g0344700_circ_g.5
ID in PlantcircBase	osa_circ_019751
Alias	NA
Organism	Oryza sativa
Position	chr3: 12842359-12844325 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0344700
Parent gene annotation	Similar to AAA-type ATPase family protein. (Os03t0344700-01)
Parent gene strand	-
Alternative splicing	Os03g0344700_circ_igg.1 Os03g0344700_circ_g.2 Os03g0344700_circ_g.3 Os03g0344700_circ_g.4 Os03g0344700_circ_igg.6 Os03g0344700_circ_g.7 Os03g0344700_circ_igg.8 Os03g0344700_circ_g.9 Os03g0344700_circ_g.10 Os03g0344700_circ_g.11 Os03g0344700_circ_g.12
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0344700-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGCTGACTAAGAGAAGAAATATCTTTTGTGAACTTGATATAGTCCTTGCAGTGCAAATTTACA
TATGCTGATGACTGGAGAGCAGATTTGGTGTTCTCActgaaatgcaaagtcaagtattgcttgg
ctgtatgggaactttgaaagaagtagagaactggcatttgcctgcatgtagaagtatgcccatt
agccataa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 772
Transcript exons: 12842359-12842427,12842527-12842697,12842778-12842848,12
842988-12843136,12843435-12843495,12843711-12843747,1284
3993-12844084,12844204-12844325
CTGAAATGCAAAGTCAAGTATTGCTTGGCTGTATGGGAACTTTGAAAGAAGTAGAGAACTGGCA
TTTGCCTTCTCTTTGTGATCATCAGGATGTACATGAGAACCAATAATAAAAGCACCTGCTGGGA
AATATTGAAGCTTGCTCTTGAGAGCACGATAGGAATCATTATTCCCACAAATTCTTTCTGTGTC
CTTCAAAAATAAGACTAGAGGACCATGCTCGATTTCTTCAGAGATAAACTGAATAATGACATCA
AATGGGTGTTTCGATCTAATTTCCCATCCTGGAGCATCGAGGCATAAAGAATCAACTGAACAAA
ATAAACCATGATCAACTTCACAATTGCCTCCTAGATCAATACCTCCCGGAATTTGTTCATCAAA
TCTTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAGACATATTTCACCTTGTGAACCA
AAATCTGGAGGACTTTCTCCATCAAGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCA
CTCTATCACCCTTTTTGTATGAATCTGATTCCTTGGTAGTCTTCCCACCAAATAGCATGGAAGA
GTCTATGGTGAGCAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGATATTGTTGGTAG
ATATCGGTTCCTGCCGGACCAGACAGCAGTACTCGCTGACTAAGAGAAGAAATATCTTTTGTGA
ACTTGATATAGTCCTTGCAGTGCAAATTTACATATGCTGATGACTGGAGAGCAGATTTGGTGTT
CTCA
						
					

						Genomic sequence
						
							CTGAAATGCAAAGTCAAGTATTGCTTGGCTGTATGGGAACTTTGAAAGAAGTAGAGAACTGGCA
TTTGCCTGCATGTAGAAGTATGCCCATTAGCCATAAATGATAAATCAACCACATAATACAGTTA
GGAGCATTTGTAGACTATACCATAAAATTACAAACAGTACCTTCTCTTTGTGATCATCAGGATG
TACATGAGAACCAATAATAAAAGCACCTGCTGGGAAATATTGAAGCTTGCTCTTGAGAGCACGA
TAGGAATCATTATTCCCACAAATTCTTTCTGTGTCCTTCAAAAATAAGACTAGAGGACCATGCT
CGATTTCTTCAGAGATAAACTATGGAGCAAACAAAGTTAGTAAAAGGAAGCAAAATATCATTTA
CATAAATCATGACTAAAATATACAGATGCACGAACCTGAATAATGACATCAAATGGGTGTTTCG
ATCTAATTTCCCATCCTGGAGCATCGAGGCATAAAGAATCAACTGAAAGAATAGTAGGTAAGAA
AGTCATATCAAGCATGAATCAATTGAAGGGTAGCAGTAAACATAATAGTTAAAAAGAAGGAGAA
CAATGTAATTTACTGGCAGTTCTTCAAAACTTATCAACAGAGCGAGGAATCACCTGAACAAAAT
AAACCATGATCAACTTCACAATTGCCTCCTAGATCAATACCTCCCGGAATTTGTTCATCAAATC
TTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAGACATATTTCACCTTGTGAACCAAA
ATCTGGAGGACTACAGAGTAAACAATTAAACATCAGCCAGCAGCAATATGTAAGAGCACATTAT
AACAACCATAAGAAGTTTATTTCCTTAGAGCAGACTAACTGCCACACATCTTTGCAAAACTAAT
GAAGCTTTTTTTAGACAATAGGCCACATCTCAGGAAGCTTCACAAGGATAAATCATGCAAAAGT
GAGAACCCATTTATTTTGTGTTGTTTTACAAAGAAACAGGCAGCTAAGACAAGCTTATGACTAC
AAATATTATGAAGTACATAGAGAATAAATAAATATTAAAAAAATTATCATACCTTTCTCCATCA
AGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCACTCTATCACCTGAAAAAAAAAGAA
CATCTGAAGATCAACAAATGACCCACACTCGCTTGACCAGTTTGACAAGAATAATAAGTTCATT
ATACTCGCATTACTACTAACGCTCAGCCATAAACTTGCAATACAACAATGTCGATGGCCTATCT
TTGGAAAGAACATAACTAGGGTTGTGAGTTGAAACTCAGTACAAGGCAACAATGTATTATGTAT
GTCCTTACCCTTTTTGTATGAATCTGATTCCTTGGTAGTCTTCCCCTGAAATAAGAAAAATAAT
GCTCAGAGTCTTTATTACTTAAATTCATACCATACCAAAACAAGTGTTTACAATTTTTTTGCTC
AAAAAGGCCAGCAAGTAAGAACACCAACATTGGTTGAATGGCACAGGTACAACAAAAAGAAATA
ACAACAATAATTCCAATAAGAATACAGATAAAAAGTTCATAAAAAAAATTCTTGGCTAACATAA
ATGAAAAAAAAGGTATAATTGCTAAGAAGCTTACACCAAATAGCATGGAAGAGTCTATGGTGAG
CAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGATATTGTTGGTAGATATCGGTTCCT
GTAAAAACATATGTTACCACACTTTACACATAGTAAAATTAAATTAATCATTGGAAAAAAATAG
TAGCATTATACAATACAATAACACCAAGCCTACAGAATGCATACAGTATGTACCTGCCGGACCA
GACAGCAGTACTCGCTGACTAAGAGAAGAAATATCTTTTGTGAACTTGATATAGTCCTTGCAGT
GCAAATTTACATATGCTGATGACTGGAGAGCAGATTTGGTGTTCTCA
						
					

			
		

Sequences
Splice junction sequence	TCGCTGACTAAGAGAAGAAATATCTTTTGTGAACTTGATATAGTCCTTGCAGTGCAAATTTACA TATGCTGATGACTGGAGAGCAGATTTGGTGTTCTCActgaaatgcaaagtcaagtattgcttgg ctgtatgggaactttgaaagaagtagagaactggcatttgcctgcatgtagaagtatgcccatt agccataa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 772 Transcript exons: 12842359-12842427,12842527-12842697,12842778-12842848,12 842988-12843136,12843435-12843495,12843711-12843747,1284 3993-12844084,12844204-12844325 CTGAAATGCAAAGTCAAGTATTGCTTGGCTGTATGGGAACTTTGAAAGAAGTAGAGAACTGGCA TTTGCCTTCTCTTTGTGATCATCAGGATGTACATGAGAACCAATAATAAAAGCACCTGCTGGGA AATATTGAAGCTTGCTCTTGAGAGCACGATAGGAATCATTATTCCCACAAATTCTTTCTGTGTC CTTCAAAAATAAGACTAGAGGACCATGCTCGATTTCTTCAGAGATAAACTGAATAATGACATCA AATGGGTGTTTCGATCTAATTTCCCATCCTGGAGCATCGAGGCATAAAGAATCAACTGAACAAA ATAAACCATGATCAACTTCACAATTGCCTCCTAGATCAATACCTCCCGGAATTTGTTCATCAAA TCTTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAGACATATTTCACCTTGTGAACCA AAATCTGGAGGACTTTCTCCATCAAGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCA CTCTATCACCCTTTTTGTATGAATCTGATTCCTTGGTAGTCTTCCCACCAAATAGCATGGAAGA GTCTATGGTGAGCAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGATATTGTTGGTAG ATATCGGTTCCTGCCGGACCAGACAGCAGTACTCGCTGACTAAGAGAAGAAATATCTTTTGTGA ACTTGATATAGTCCTTGCAGTGCAAATTTACATATGCTGATGACTGGAGAGCAGATTTGGTGTT CTCA
Genomic sequence	CTGAAATGCAAAGTCAAGTATTGCTTGGCTGTATGGGAACTTTGAAAGAAGTAGAGAACTGGCA TTTGCCTGCATGTAGAAGTATGCCCATTAGCCATAAATGATAAATCAACCACATAATACAGTTA GGAGCATTTGTAGACTATACCATAAAATTACAAACAGTACCTTCTCTTTGTGATCATCAGGATG TACATGAGAACCAATAATAAAAGCACCTGCTGGGAAATATTGAAGCTTGCTCTTGAGAGCACGA TAGGAATCATTATTCCCACAAATTCTTTCTGTGTCCTTCAAAAATAAGACTAGAGGACCATGCT CGATTTCTTCAGAGATAAACTATGGAGCAAACAAAGTTAGTAAAAGGAAGCAAAATATCATTTA CATAAATCATGACTAAAATATACAGATGCACGAACCTGAATAATGACATCAAATGGGTGTTTCG ATCTAATTTCCCATCCTGGAGCATCGAGGCATAAAGAATCAACTGAAAGAATAGTAGGTAAGAA AGTCATATCAAGCATGAATCAATTGAAGGGTAGCAGTAAACATAATAGTTAAAAAGAAGGAGAA CAATGTAATTTACTGGCAGTTCTTCAAAACTTATCAACAGAGCGAGGAATCACCTGAACAAAAT AAACCATGATCAACTTCACAATTGCCTCCTAGATCAATACCTCCCGGAATTTGTTCATCAAATC TTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAGACATATTTCACCTTGTGAACCAAA ATCTGGAGGACTACAGAGTAAACAATTAAACATCAGCCAGCAGCAATATGTAAGAGCACATTAT AACAACCATAAGAAGTTTATTTCCTTAGAGCAGACTAACTGCCACACATCTTTGCAAAACTAAT GAAGCTTTTTTTAGACAATAGGCCACATCTCAGGAAGCTTCACAAGGATAAATCATGCAAAAGT GAGAACCCATTTATTTTGTGTTGTTTTACAAAGAAACAGGCAGCTAAGACAAGCTTATGACTAC AAATATTATGAAGTACATAGAGAATAAATAAATATTAAAAAAATTATCATACCTTTCTCCATCA AGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCACTCTATCACCTGAAAAAAAAAGAA CATCTGAAGATCAACAAATGACCCACACTCGCTTGACCAGTTTGACAAGAATAATAAGTTCATT ATACTCGCATTACTACTAACGCTCAGCCATAAACTTGCAATACAACAATGTCGATGGCCTATCT TTGGAAAGAACATAACTAGGGTTGTGAGTTGAAACTCAGTACAAGGCAACAATGTATTATGTAT GTCCTTACCCTTTTTGTATGAATCTGATTCCTTGGTAGTCTTCCCCTGAAATAAGAAAAATAAT GCTCAGAGTCTTTATTACTTAAATTCATACCATACCAAAACAAGTGTTTACAATTTTTTTGCTC AAAAAGGCCAGCAAGTAAGAACACCAACATTGGTTGAATGGCACAGGTACAACAAAAAGAAATA ACAACAATAATTCCAATAAGAATACAGATAAAAAGTTCATAAAAAAAATTCTTGGCTAACATAA ATGAAAAAAAAGGTATAATTGCTAAGAAGCTTACACCAAATAGCATGGAAGAGTCTATGGTGAG CAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGATATTGTTGGTAGATATCGGTTCCT GTAAAAACATATGTTACCACACTTTACACATAGTAAAATTAAATTAATCATTGGAAAAAAATAG TAGCATTATACAATACAATAACACCAAGCCTACAGAATGCATACAGTATGTACCTGCCGGACCA GACAGCAGTACTCGCTGACTAAGAGAAGAAATATCTTTTGTGAACTTGATATAGTCCTTGCAGT GCAAATTTACATATGCTGATGACTGGAGAGCAGATTTGGTGTTCTCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.132885172

Conservation Information
Conserved circRNAs	NA
PMCS	0.132885172

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							12842626-12844325(-)
						
						Potential amino acid sequence
						
							MIPIVLSRASFNISQQVLLLLVLMYILMITKRRQMPVLYFFQSSHTAKQYLTLHFSENTKSALQ
SSAYVNLHCKDYIKFTKDISSLSQRVLLSGPAGTDIYQQYLVKALAKHFGARLLTIDSSMLFGG
KTTKESDSYKKGDRVRYIGSLQSTGIILDGESPPDFGSQGEICLPFEENRSSKVGVRFDEQIPG
GIDLGGNCEVDHGLFCSVDSLCLDAPGWEIRSKHPFDVIIQFISEEIEHGPLVLFLKDTERICG
NNDSYRALKSKLQYFPAGAFIIGSHVHPDDHKEKANASSLLLSKFPYSQAILDFAFQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	12842626-12844325(-)
Potential amino acid sequence	MIPIVLSRASFNISQQVLLLLVLMYILMITKRRQMPVLYFFQSSHTAKQYLTLHFSENTKSALQ SSAYVNLHCKDYIKFTKDISSLSQRVLLSGPAGTDIYQQYLVKALAKHFGARLLTIDSSMLFGG KTTKESDSYKKGDRVRYIGSLQSTGIILDGESPPDFGSQGEICLPFEENRSSKVGVRFDEQIPG GIDLGGNCEVDHGLFCSVDSLCLDAPGWEIRSKHPFDVIIQFISEEIEHGPLVLFLKDTERICG NNDSYRALKSKLQYFPAGAFIIGSHVHPDDHKEKANASSLLLSKFPYSQAILDFAFQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0344700_circ_g.5

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