Detail information of Os03g0344700_circ_g.10


General Information
CircRNA Name Os03g0344700_circ_g.10
ID in PlantcircBase osa_circ_019756
Alias NA
Organism Oryza sativa
Position chr3: 12842988-12844084  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0344700
Parent gene annotation Similar to AAA-type ATPase family protein. (Os03t0344700-01)
Parent gene strand -
Alternative splicing Os03g0344700_circ_igg.1 Os03g0344700_circ_g.2 Os03g0344700_circ_g.3 Os03g0344700_circ_g.4 Os03g0344700_circ_g.5 Os03g0344700_circ_igg.6 Os03g0344700_circ_g.7 Os03g0344700_circ_igg.8 Os03g0344700_circ_g.9 Os03g0344700_circ_g.11 Os03g0344700_circ_g.12
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0344700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCTTACACCAAATAGCATGGAAGAGTCTATGGTGAGCAACCTAGCACCAAAGTGTTTTGCAA
GTGCCTTAACCAGATATTGTTGGTAGATATCGGTTCctgaacaaaataaaccatgatcaacttc
acaattgcctcctagatcaatacctcccggaatttgttcatcaaatcttactccaacctttgat
gatctatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAACAAAATAAACCATGATCAACTTCACAATTGCCTCCTAGATCAATACCTCCCGGAATTTG
TTCATCAAATCTTACTCCAACCTTTGATGATCTATTCTCTTCGAAAGGAAGACATATTTCACCT
TGTGAACCAAAATCTGGAGGACTACAGAGTAAACAATTAAACATCAGCCAGCAGCAATATGTAA
GAGCACATTATAACAACCATAAGAAGTTTATTTCCTTAGAGCAGACTAACTGCCACACATCTTT
GCAAAACTAATGAAGCTTTTTTTAGACAATAGGCCACATCTCAGGAAGCTTCACAAGGATAAAT
CATGCAAAAGTGAGAACCCATTTATTTTGTGTTGTTTTACAAAGAAACAGGCAGCTAAGACAAG
CTTATGACTACAAATATTATGAAGTACATAGAGAATAAATAAATATTAAAAAAATTATCATACC
TTTCTCCATCAAGGATAATACCTGTTGACTGTAACGAACCAATGTACCGCACTCTATCACCTGA
AAAAAAAAGAACATCTGAAGATCAACAAATGACCCACACTCGCTTGACCAGTTTGACAAGAATA
ATAAGTTCATTATACTCGCATTACTACTAACGCTCAGCCATAAACTTGCAATACAACAATGTCG
ATGGCCTATCTTTGGAAAGAACATAACTAGGGTTGTGAGTTGAAACTCAGTACAAGGCAACAAT
GTATTATGTATGTCCTTACCCTTTTTGTATGAATCTGATTCCTTGGTAGTCTTCCCCTGAAATA
AGAAAAATAATGCTCAGAGTCTTTATTACTTAAATTCATACCATACCAAAACAAGTGTTTACAA
TTTTTTTGCTCAAAAAGGCCAGCAAGTAAGAACACCAACATTGGTTGAATGGCACAGGTACAAC
AAAAAGAAATAACAACAATAATTCCAATAAGAATACAGATAAAAAGTTCATAAAAAAAATTCTT
GGCTAACATAAATGAAAAAAAAGGTATAATTGCTAAGAAGCTTACACCAAATAGCATGGAAGAG
TCTATGGTGAGCAACCTAGCACCAAAGTGTTTTGCAAGTGCCTTAACCAGATATTGTTGGTAGA
TATCGGTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.135247675
Functional Information
Coding potential Y
Potential coding position 12843007-12844015(-)
12844006-12842990(-)
Potential amino acid sequence MVYFVQEPISTNNIWLRHLQNTLVLGCSP*(-)
MLFGGKTTKESDSYKKGDRVRYIGSLQSTGIILDGESPPDFGSQGEICLPFEENRSSKVGVRFD
EQIPGGIDLGGNCEVDHGLFCSGTDIYQQYLVKALAKHFGARLLTIDSSMLFGGKTTKESDSYK
KGDRVRYIGSLQSTGIILDGESPPDFGSQGEICLPFEENRSSKVGVRFDEQIPGGIDLGGNCEV
DHGLFCSGTDIYQQYLVKALAKHFGARLLTIDSSMLFGGKTTKESDSYKKGDRVRYIGSLQSTG
IILDGESPPDFGSQGEICLPFEENRSSKVGVRFDEQIPGGIDLGGNCEVDHGLFCSGTDIYQQY
LVKALAKHFGARLLTIDSSMLFGGKTTKESDSYKKGDRVRYIGSLQSTGIILDGESPPDFGSQG
EICLPFEENRSSKVGVRFDEQIPGGIDLGGNCEVDHGLFCS(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017