Detail information of Os11g0707000_circ_g.10


General Information
CircRNA Name Os11g0707000_circ_g.10
ID in PlantcircBase osa_circ_010235
Alias NA
Organism Oryza sativa
Position chr11: 28935536-28935834  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0707000
Parent gene annotation Similar to Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic. (Os11t0707000-01);Ribulose-bisphosphate carboxyl
ase activase (EC 6.3.4.-) (Fragments). (Os11t0707000-02);Similar
to Ribulose bisphosphate carboxylase/oxygenase activase, chloro
plastic. (Os11t0707000-03);Non-protein coding transcript. (Os11t
0707000-04)
Parent gene strand -
Alternative splicing Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.1 Os11g0707000_circ_ag.2 Os11g0707000_circ_ag.3 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_ag.8 Os11g0707000_circ_g.9 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14
Support reads 2
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0707000-03:1
Os11t0707000-01:2
Os11t0707000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCTGCTTCTT
CAGCTTCTTCCCCAGGAAGTTGGTCGGAGTGGACGCgttctgagaccctggctgaggtactcgt
aggagctgaggacggcctcgtgggtgccatcacccgtgggagcctggaaaagggagtcgacgaa
acccttcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 261
Transcript exons: 28935536-28935558,28935597-28935834
GTTCTGAGACCCTGGCTGAGGTACCGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCC
CTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGG
TCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCC
ATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTG
GACGC

Transcript length: 299
Transcript exons: 28935536-28935834
GTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCG
TGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCGGA
GATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCTTG
GCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCT
GCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTGGACGC

Genomic sequence GTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCATCACCCG
TGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCCCTGGTGATGTCCTGCTGGTCATCGGA
GATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGGTCTGCTTGCCCTCGTCCAGCTCCTTG
GCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCCATGGTAGTTCACCGCCGATGTCACCT
GCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTGGACGC
Conservation Information
Conserved circRNAs osi_circ_003261*
PMCS 0.429102258
Functional Information
Coding potential Y
Potential coding position 28935767-28935831(+)
28935784-28935641(+)
28935734-28935538(-)
28935661-28935800(-)
Potential amino acid sequence MVVHRRCHLLLQLLPQEVGRSGRVLRPWLRYRGSLEKGVDETLPPGDVLLVIGDVVGETLPPVL
VGLLALVQLLGHHLEPVDVGALAMVVHRRCHLLLQLLPQEVGRSGRVLRPWLRYRGSLEKGVDE
TLPPGDVLLVIGDVVGETLPPVLVGLLALVQLLGHHLEPVDVGALAMVVHRRCHLLLQLLPQEV
GRSGRVLRPWLRYRGSLEKGVDETLPPGDVLLVIGDVVGETLPPVLVGLLALVQLLGHHLEPVD
VGALAMVVHRRCHLLLQLLPQEVGRSGR(+)
MSPASSASSPGSWSEWTRSETLAEVPWEPGKGSRRNPSPW*(+)
MAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTVPQPGSQNASTPTNFLGKK
LKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLF
QAPTVPQPGSQNASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKG
LAYDISDDQQDITRGKGFVDSLFQAPTVPQPGSQNASTPTNFLGKKLKKQVTSAVNYHGKSSNI
NRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTVPQPGSQN(-)
MTSRTSPGGRVSSTPFSRLPRYLSQGLRTRPLRPTSWGRS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017