Detail information of BGIOSGA001731_circ_g.2


General Information
CircRNA Name BGIOSGA001731_circ_g.2
ID in PlantcircBase osi_circ_009349
Alias Chr01:13402553_13404717(MH63RS2), Chr01:13402553_13404717(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14562322-14564487  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA001731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001731_circ_g.1 BGIOSGA001731_circ_g.3 BGIOSGA001731_circ_g.4 BGIOSGA001731_circ_g.5 BGIOSGA001731_circ_g.6 BGIOSGA001731_circ_g.7 BGIOSGA001731_circ_g.8 BGIOSGA001731_circ_g.9 BGIOSGA001731_circ_g.10 BGIOSGA001731_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA001731-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTGCTCCAGACATGGTAAAAGAATCCATCAAAATACGAAGAATTTCCAGAAATTGACAGTG
CATTGCCTCACCGAAGTCAGTTACCATTCCTTTGACcctgttgatacttaagtctaaaggcctg
aatactcccaaagtgttcaaacttcataagttgatcccaaaaggactcattggcatatataata
agttgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTGATACTTAAGTCTAAAGGCCTGAATACTCCCAAAGTGTTCAAACTTCATAAGTTGATC
CCAAAAGGACTCATTGGCATATATAATAAGTTGTTTTAGACCTTCCTGCAAAAGAAAGAATTCT
TTGAGCAAACAAAAAACCATATCAACTACCTGGTAGTTCTGAACGTGTACCTTCCGTATGTATT
CCAAAAGTTCGAGTACTCCTGACTGTAGCATGTTATATCTATCCCCATTTTCAACAAAGGCGTC
AATTATTGGTTTGAACAAATTCATCTTGACAACATGACGAATAAGAAAATCATCCTACAAGAAG
AAAGAAATATTAACTGTGATCCGAAAAACTATAGCAAGTTGTTTGAATTTACTCTATCCCTTCG
AATCAGGATATAGTTGCTGGTCCAAGTAAAACATACAAGTCTAAAATATAAAATGCAATAACTT
AATTATCCTTAACTCTTGAAATTCTATATCTGATCATATAAAAGACCAATTGGCCGCCTACATA
TATTCATGTGCAAAGATGAAATATTTTTCTACAGAAGTTCTTACAAATAACACATATACGAGTG
CATATTTGCAGCTACAAAAGATCCTGACGATAGGTAGGTGTAGAACCTACCATCACCACCCAAC
TCTCTCTTTTAAAGAGTAAAATATATATACACACATAAGATTACCAACTATTTTTACTGATAAT
TATGTAAAGATGTAATCAGACCATGATAACTACTGGACTGATGTGATTTAAGGAACAAGCTGTA
AATTTCACGCAGAAGTGGCATGCTGAAATTCAAGCAGAACCATAGGCATGTTGAATACATCAAG
TGGTAACAATTGTGCATAAATACAAGATGCAAACCCTGAGGATAGCAACTTTGTAGGTAGGAAA
CATGTAATAGTACACGATACGTAGTGAAAAATGGAAGGGCATGCAATTACCACCACTCTTTGAT
GCATTAAGGGATTGAATTGTTGGATGATTAAGAATGTTCCACTATTCCATATACTCCCTCCTTC
CCAAATTGATCATCATATAAGTTTATGCACTAAGACCAAGTACAATTTAAATCACATCAATCAA
GACACAATGCACACATTCTCCCACAATGCATGCATCGATTAAAACCACATGCCAATTACACCCT
AGCATGCACACATTCCCCCATACTGCATTAATTGTATTCTAATGAAATCCGTGTCCATGCGGTT
ATATGATAATCAAATTGAGAAATTTTTGATTATATTACATGATGATCAATATGGGAAGGAGGGA
GTATTTCGTAAATGCAGAAGTAAATAACTTAAGGGAACTTTACATTTTCCCAGTGCTGAATTTC
CTTCACCAGTCAAAACAAGTGCAAAAAAGTTTATAAAGTCAATAGCACCTTACATTTCTCGATA
TAGTAGTTCGCATAAATCTAACTGCTGCAACAACCAAAAACTTCTCCCTCCGTCGAGTCAAGGC
AAGGATTTTCTCTATTGCATTGTTGATTAGAAAGTGACACCTACACGATTATATAATGTGCAAT
TAGCAGGTGCATAAGAATTATAACAGAAGTACTCTTGGAATAGTGGAAGCATGGAACATTACTT
AATTTTGTAGGGATGATGAACTATGCAAAAGCATAATAGTTCACAAACATTTAACAAAATTTCA
GGCTTAGTGCGATTCACTTCAGTTTCGGTATTTCCAGCAGAGTTAGATGCTCTGGAAATGTTCC
TCGGAGGACATGATGATGCTATTACATCAACCAAATAGTCAAGATGCTTTTCATAGAAAATTTC
AATAACAGCATCTCTCTGCACCAGAGGGAATAAGAGTTAGTACGAGCTAAATAAAAAGGACAGG
TGCAAGTTTCTGTCATTCTGAATTGGCTTTATTATGGCCAGATCATGACAGAAATTATCCATCA
AAACTAGATGCATCCAAATATTGGTAAGTGTGATGTCCACAATCATTTTTTTCCTCAGTTTTCA
TAACAACATAGCTGCGCATTTTATTTGAGGAATGCAGATAACATATGACCTTCACACCTACTTC
GACAGAAATTACAACTTACATGTGCTCCAGACATGGTAAAAGAATCCATCAAAATACGAAGAAT
TTCCAGAAATTGACAGTGCATTGCCTCACCGAAGTCAGTTACCATTCCTTTGAC
Conservation Information
Conserved circRNAs osa_circ_001618
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021