Detail information of BGIOSGA001731_circ_g.3


General Information
CircRNA Name BGIOSGA001731_circ_g.3
ID in PlantcircBase osi_circ_009350
Alias Chr01:13403948_13404717(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14563718-14564487  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001731_circ_g.1 BGIOSGA001731_circ_g.2 BGIOSGA001731_circ_g.4 BGIOSGA001731_circ_g.5 BGIOSGA001731_circ_g.6 BGIOSGA001731_circ_g.7 BGIOSGA001731_circ_g.8 BGIOSGA001731_circ_g.9 BGIOSGA001731_circ_g.10 BGIOSGA001731_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001731-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTGCTCCAGACATGGTAAAAGAATCCATCAAAATACGAAGAATTTCCAGAAATTGACAGTG
CATTGCCTCACCGAAGTCAGTTACCATTCCTTTGACcatttctcgatatagtagttcgcataaa
tctaactgctgcaacaaccaaaaacttctccctccgtcgagtcaaggcaaggattttctctatt
gcattgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTCTCGATATAGTAGTTCGCATAAATCTAACTGCTGCAACAACCAAAAACTTCTCCCTCCG
TCGAGTCAAGGCAAGGATTTTCTCTATTGCATTGTTGATTAGAAAGTGACACCTACACGATTAT
ATAATGTGCAATTAGCAGGTGCATAAGAATTATAACAGAAGTACTCTTGGAATAGTGGAAGCAT
GGAACATTACTTAATTTTGTAGGGATGATGAACTATGCAAAAGCATAATAGTTCACAAACATTT
AACAAAATTTCAGGCTTAGTGCGATTCACTTCAGTTTCGGTATTTCCAGCAGAGTTAGATGCTC
TGGAAATGTTCCTCGGAGGACATGATGATGCTATTACATCAACCAAATAGTCAAGATGCTTTTC
ATAGAAAATTTCAATAACAGCATCTCTCTGCACCAGAGGGAATAAGAGTTAGTACGAGCTAAAT
AAAAAGGACAGGTGCAAGTTTCTGTCATTCTGAATTGGCTTTATTATGGCCAGATCATGACAGA
AATTATCCATCAAAACTAGATGCATCCAAATATTGGTAAGTGTGATGTCCACAATCATTTTTTT
CCTCAGTTTTCATAACAACATAGCTGCGCATTTTATTTGAGGAATGCAGATAACATATGACCTT
CACACCTACTTCGACAGAAATTACAACTTACATGTGCTCCAGACATGGTAAAAGAATCCATCAA
AATACGAAGAATTTCCAGAAATTGACAGTGCATTGCCTCACCGAAGTCAGTTACCATTCCTTTG
AC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021