Detail information of BGIOSGA015284_circ_igg.1


General Information
CircRNA Name BGIOSGA015284_circ_igg.1
ID in PlantcircBase osi_circ_005398
Alias 4:14326141|14327295
Organism Oryza sativa ssp. indica
Position chr4: 14326141-14327295  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015284_circ_igg.2 BGIOSGA016178_circ_ig.1 BGIOSGA015282_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGTGATTCATGCAGCTCACCATCATTAGTCTCTAACATTGGTCGCTTACGCTTAGGGCGCAC
ACAAACCGTAGATTTCCCATCAGTCGCAGACATAATcttatattctcaaagaaatgagctgatt
tagctctatccactccagttagaagactatgcaaaggctctggtggtggtttgtagggaggcaa
gataacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATATTCTCAAAGAAATGAGCTGATTTAGCTCTATCCACTCCAGTTAGAAGACTATGCAAAG
GCTCTGGTGGTGGTTTGTAGGGAGGCAAGATAACACTCCCTCCTTTGCAGCATTTGTTGTATAA
TGGTCTTGTTGTGTGACGGCGTCGATCGATACGCTCCTCATACCAAAACAATGCACCACAATAA
CCACATGTGTGACTTGGTGGACCAAGGCTCAACGGAGAGAAAACAGAACCTGACAACAAAAAAA
AAGGAAAATGTGAGTTCGAGCGCACATTTTAGGGTAAAAGGTATCAATCTATCGAGGCAAGAGT
GAATACATCGAGATGAACATCGAGACTGAACATTCACAATCGAGTAGTTTGATGAGCAGCCATA
ATTGAGCAGCGGAGATAACATTCATCATTGAGCATCGCATAGGAGTCGTCTGTGAGAATTAAGA
TGAATCAGTATGTATCGTGTATGCATTCTCATTTGTAAGGAACAAAATGTGTTCGAATACATAT
GGCCGAGAACAAACAGGAAAAATATATGTTAGCGATGGACTTACGGGAATGACCATTTGTAGGA
ATAGCAGTATGAGAAGACGATGCATCTGCGGAAAGCAATATTAGGATATTAAGCACATAATATG
CAAAAGAAAAGGAATTGTAAATTTGAGACACAATATAGACACCTTTATCATGTATAGAAGATGA
TGAATCTGCCAACCGCCGTCGCAATACCCTAGAATGTTGTGACATATATGCTTTACGTTTTTTA
CGTGATTGAGCAGCCATGGCAGAATCCGGGCGAGGAAAATCTGAGGAATAAGTAAGAGAATAGC
ATTAGCTACATTGCATGGAAGCATTGTGAAGGCAGATGGAGCACACTATCTGTAAACTTAGTAT
TCTATTTAAGATATAAAAATGAGCAGGAAGCACAGAGAGGTGTTTTAAAAAAATCCAGCACCAT
GGTGGTCATACCAGCAAGCTGAGTACACAAACGGCGTCGAACATGCCAGTTAGATCTGAAATTG
AAGGCTGTGGGGAAGTCATCAGCGTGGTTTGATGGTGATTCATGCAGCTCACCATCATTAGTCT
CTAACATTGGTCGCTTACGCTTAGGGCGCACACAAACCGTAGATTTCCCATCAGTCGCAGACAT
AAT
Conservation Information
Conserved circRNAs osa_circ_023503*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021