Detail information of 2_circ_ag.11


General Information
CircRNA Name 2_circ_ag.11
ID in PlantcircBase ath_circ_015523
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12592364-12597195  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G29290_circ_g.1 AT2G29290_circ_g.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10 2_circ_ag.12 2_circ_ag.13 AT2G29340_circ_g.1 AT2G29360_circ_g.1 AT2G29360_circ_g.2
Support reads 34
Tissues root, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTTCTGGTCATTGAAAGTAACTTACAAGCAAAATGGACAAAAGATGGAGTCTCAAAGGTAT
GACTGCTCTTGTGACCGGTGGAGCCAGTGGAATCGGttatgccatagtagaagagttagctggt
tttggagctaaaatccacatatgtgacatatccaaaactttgctcaatcaaagtttaagcgaat
gggaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATGCCATAGTAGAAGAGTTAGCTGGTTTTGGAGCTAAAATCCACATATGTGACATATCCAAA
ACTTTGCTCAATCAAAGTTTAAGCGAATGGGAAAATAAAGGGTTTCAAGTGAGTGGTTCAGTAT
GTGATGTAACCTCTCATCCTGAGAGAGAAAAACTGATGCAAACCGTCTCCTCGATTTTCGATGG
CAAACTCAACATTCTTGTAAGTGAATGATCTTTATATAGAAACAACTAAGCAAACTCTACAAAA
CAAAAAGATAACTTAAGAGAGAATTTTTGTTCAACATAGGTAAATAACGTGGGGGTACTTCGCG
GAAAGCCAACAACAGAATATGTGGCAGACGATTTCACTTTTCATATATCAACTAACTTGGAAGC
TGCTTACCATTTTTGTCAACTTTCACATCCTCTCTTAAAGGCTTCAGGCTATGGAAGCATTGTA
TTCCTTTCCTCTGTTGCTGGGGTTGTATCACTAATTGACTGTGGATCCATTTATGGTCTAACAA
AAGGTAAATTACTCCAAATCTGACTAATCAACAAAGAGTTTTTTACCAAAAAAAACAAAACAAA
GAGTTTTCTGCTTCCTTATTTTGTAGTGTTTTGTTGACTTCTTTTATAGGAGCTCTAAATCAAT
TAGCTAGAAACTTGGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAATGCTGTTGCACCTAA
TGTTGTCAAGACTGCTCAGTCTCAATCGGTAAAATAAAAATAACTTTTACATCTTTTTATTTTT
GTGGATTTAACGACATCAATTTCTCTAATTATCTCTCAATTTTTGTGTTAAAAGTTTCTTGAAG
ACGTCAGTAAAAAGGAGGGATTGTTGAGTAGAACTCCACTTGGCCGTGTTGGAGAGCCGAATGA
AGTTTCATCACTAGTGGTCTTCTTGTGTCTACCTGCAGCTTCTTATATCACAGGTCAAACCATT
TGTGTTGATGGAGGTCTCACGGTTAACGGTTTCTCCTATCAACCACATGCTTGAGAAATAGTCT
TGTCGCTCTCAAAGTTCTATATCTAATAAAAGTTCTCATTCTATGAGTTTATAAACGTAAACAT
CAATGAGTTTGCAATTCCATATTGGAGATACTAATCTCGCACATATACAAGATTCGGTTACACC
CGCTACGCCAACAACTCACACCAATGTGATCTCTCATTCTCTCTCATAAATGAAATGTTATACT
ATTTTTTGAGAATTGTAGCATTGATAGGATAGATTACAGTCTATATGTCTCTGATTTTAAATGT
TAATTGTAACACAAGATGATTATATTGTACATATTTTTGTTGTTGTTGTTCCGTCTATTTTGCT
GATTATACTTGTTTATTGTTGTTCTTCCGTGTCTGTCGTGTTTTATCTGTTTGTCTTAAACTTT
GTATTTTATATCTTGTGATTTTTGATACTACACGACAAAAATGACCTTGTCGTGTTTTATCTTG
TGAATTATTTTATTCTTTCGCTATTAGATTAATCCATTTTGTGAATAATTTGCGAGCAAGGCCC
TCACACACATAATTATACCTTTTGAGTCTTGAATCAAAAGGCTGTCAAAAAAAAAAAAAAAAAA
AAAAAATCTTGAATCAAGTTGATAGATACATATGGGCTTGCGTGATCTTGAGTCTTGAATTCAT
AATAGGCGAATTTGAATCTTGAACGACTAATCGATAACAAACAAACAAAAAAATATTATATAAT
TGGTTAGAGTAGTTAACTCTATCACGCTTAATGAGCATTTTATATTTGTCTTTGAATGACAATT
CAAGTAAATACTTTAATTTCAAAATTGATGGATCGTTTTTTCATTGTACTTTTCTTCGAATAAT
ATTAGAGATAATCTTCCACACTTAAAATAGATTAATCTCATTGTCTCTCATCCTACATAAGCTT
CTTACTTTAATTTGTCTACATCCCTCTTGTCTCAATTAAGTATTATTATTAACGCTTCAAATTC
TTACTACCTAAACACGTGAACAGTAGTCTTTCAGTAGTCTTTTAATTTGCGAGTGAAGTTAATG
AAAAAAATACAAAATGGTAAGTTTTGGTCAAGATTTTGACTATTAAAATTAATATTTGCTCTTG
ACCACTAAGTATATTTTTGTCATCTCTTTATTATGGCTAAAAATTGACACTTATCTAATACTCA
TTCATTGGATATATATATATAATGTGTAGCATTTCTGGTCAGTGAAAATTGACATACAAGGACT
ATGGATAAAAGGTGGAGTCTCCAAGGTTTGACTGCTCTTGTGACCGGTGGAGCCAGCGGAATCG
GGTTCGTCTAGATTCTCACTATATCAACTCTTTTACCCATTGTTCTGTTTCTAAAATTCATTCT
AAATTGTTAAAGTTTTAAGGAGTTTTATTATGTTTATCGAATGTTTAGTCATGCTATAGTAGAA
GAACTCGCCGGTTTTGGGGCCAAAATCCATGTGTGTGACATATCGAAAACTCTGCTCAATCAAA
GTTTATCCGAATGGGAGAAGAAAGGGTTTCAAGTGAGTGGTTCAGTCTGCGATGCATCCAATCG
TCTCGAAAGAGAAACACTTATGCAAACTGTCACCACAATATTTGATGGCAAGCTTAACATTCTT
GTAAGTTAATCTTAATTTAAAGAAACTAAGCATATCTTTAAGCTATTTAGAAATGACATGAATA
TATACTCTTTTCTGTTCAATATAGGTGAACAATGTTGGCACAATTCGCACAAAGCCAACAATAG
AATATGAGGCAGAAGATTTTTCGTTCCTTATTTCAACAAACTTGGAATCTGCTTATCATCTAAG
CCAACTTTCACATCCACTCCTAAAGGCTTCAGGCAACGGAATTATTACTTTTATTTCCTCTGCT
GCAGGGATCGTATCATTTGATGCTGCATCCATTTATGGTCTAACGAAAGGTAACCATAGTGAAA
AGTTTAATACTAGAGGAAGTTCATTGCAAGAATGACCAAATAGTATTGTGGATTTATATATGTT
TCATTATGTATATTATATATTTGATTAGGATAATTTTCAATCCCATTTAATAATTTCAAATGAT
ATTTGAGAAGAATTGTTTTTTTTTTTTTTTTGTGCGTGAAATCTTATTTTAGTGTGCTATGCTA
ACATTTTTGGTTTCAGAAATATATAATTCAGAAGGTCAAATATAGGGCATTCATATTCAATAAC
ATACAAAAACAAAACTAATTTATAACTATGCATGTTATTTATGGATAATAAATCTTTTTATTTT
TATTTAGATGGTTCATAAATATCGCATTATGTCTCCGAAAGCTGATTCTAACGGCTAATTGATT
GCCCTAGTATCATTCGTTTCTATTTCTAAATTGGTCTATCTTTCTTTGGGAATCCTAATAGATG
TCTCTCATAGTCATAGTATTATTTTTTCTTGTTTGTGTATATGTTCAGGAGCTTTGAATCAGCT
AGCACGAAATTTGGCGTGTGAATGGGCAAAAGACGGCATTCGAGCCAACGCGGTTGCGCCTAAT
TTTATCACCACTGCTCTGGCTAAACCTGTAACCAATACACCCTCTCTTTTTTTTCTTTTTTTTC
CTTTTAAAATTAACATCATCACCCACTCTTATTCTTGTTTTTTACAATCTTGTAAACATTCAGT
TTCTCGAAGACGCTGGTTTTAACGAGATTTTGTCGAGTAGAACTCCACTTGGTCGCGCTGGAGA
ACCAAGAGAGGTTGCCTCACTTGTGGCTTTTCTGTGTCTACCTGCTGCTTCATATATTACTGGT
CAGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCATATCAGCCATAGGCTTGAG
CCATGTCTTGTCTTGTCTTGTGTGTTGTGGAGTATGGTCATATGGTCAGTATCTCCATAATCTA
AATCCATAGATATGTGAGTTGTGGAGTAGACACAATTTTTCAATAATGGAATATCTATTTACCA
GTTCCGTATTATGCATGCATTCTCCATGACAACGCTTCTCATAACGAATATAATTACGTGGATC
ATAATACTATGAGGATTGATATCATTGAGATGGAGTAGACACAGTTATTTTCTTCTTCCCTTGC
CATTAGCAATTTCAATTGTATCTATGCTTGAAATACTTAAATGGCATTTACTTCTTAACTAAAA
AGCGAAAGGAGGGAAAGAACAAGTCATTACAAGATACTATAATAATTAGAAATTAAAAGAGTAT
AATTACATCTTCCCAAATGTGTCAAATATTCAGCAAAAACTCTGTCAATAGAAATGAACAAACG
GTATTTTAAAGTAATACAATGGGTAAACTTTAGATATTTTGTAAAAACCTAATTAGAAAAAAAA
TTTGGAAATCTTAGTTGAAGATAACTACCCAAATTATGAAAAAAAAAACATTTGCCTTCTTGTT
ACCTAACTAACACGTTGAATGTTTTACAAAAATTTTGTTCACCAGTCTAACTGACTTGTCGTTT
CAGTTGTCATCTTTTGAATGAAATTAATGGAAAAGAAAGAAACAAAAATGAGTAAGTTTAGATC
AAGATTTTGACTATTAAAAGTCATATTTGCTCTTGACCACTGACTTGTATATTTTGTCATGTTA
TTTATTATGGCTAATATATCCACCACACATACAAACATACTCATTAATTGACCCTTATCTTTTA
TTTTTATGGTAAGAAAATTGACACTTATCTAATACTCACTAGGTGTGTATATATAATGTAGCAT
TTCTGGTCATTGAAAGTAACTTACAAGCAAAATGGACAAAAGATGGAGTCTCAAAGGTATGACT
GCTCTTGTGACCGGTGGAGCCAGTGGAATCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.66526401
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR857
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017