Detail information of GLYMA_06G222100_circ_g.3


General Information
CircRNA Name GLYMA_06G222100_circ_g.3
ID in PlantcircBase gma_circ_001522
Alias Gm06circRNA624
Organism Glycine max
Position chr6: 28887394-28921659  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method Tophat, CIRI
Parent gene GLYMA_06G222100
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_06G222100_circ_g.2 GLYMA_06G222100_circ_g.4 GLYMA_06G222100_circ_g.5 GLYMA_06G222100_circ_g.6 GLYMA_06G222100_circ_g.7 GLYMA_06G222100_circ_g.8 GLYMA_06G222100_circ_g.9
Support reads NA
Tissues root, stem
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered KRH54967:28
KRH54968:28
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTAGAGAACTTGAATTACTGTCCTGTGCAAAATCATGTGATCCCACAACTCGGTATGGACT
AAGCACACTCATAATCCGCTCCTTGGATTCTTTTATcttgctaagaataccaacaactaaattg
acctgctctgttcttagttcatctgcctcggcaatgtctaaacggagaacttgatcaaacagtg
attgatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.010976866
Functional Information
Coding potential Y
Potential coding position 28921637-28887396(-)
Potential amino acid sequence MSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWTFVNF
AGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQ
TAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLKGALR
NAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARREQYPS
TISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHM
VLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSV
IAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALLEYVR
YDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNNDDPG
ILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGVNALL
HEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLHQRAW
LLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRTVSKS
KVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLIDLASF
HDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEV
SASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPGSLSS
DNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDVPT
TVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKTISLY
VLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLLRISH
KYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLVFSLT
SLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIKESKE
RIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWTFV
NFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQS
LQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLKGA
LRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARREQY
PSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHF
HMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVN
SVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALLEY
VRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNNDD
PGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGVNA
LLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLHQR
AWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRTVS
KSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLIDLA
SFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIV
EVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPGSL
SSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDV
PTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKTIS
LYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLLRI
SHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLVFS
LTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIKES
KERIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWT
FVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFK
QSLQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLK
GALRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARRE
QYPSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLK
HFHMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPG
VNSVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALL
EYVRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNN
DDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGV
NALLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLH
QRAWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRT
VSKSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLID
LASFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQ
IVEVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPG
SLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDP
DVPTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKT
ISLYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLL
RISHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLV
FSLTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIK
ESKERIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVL
WTFVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEK
FKQSLQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPY
LKGALRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEAR
REQYPSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGAC
LKHFHMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILL
PGVNSVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVA
LLEYVRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLEN
NNDDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKP
GVNALLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSS
LHQRAWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAI
RTVSKSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRL
IDLASFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAW
SQIVEVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLF
PGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVV
DPDVPTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPG
KTISLYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELAL
LLRISHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLR
LVFSLTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSK
(-)
Sponge-miRNAs gma-miR10420
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017a