Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_06G222100_circ_g.3 |
| ID in PlantcircBase | gma_circ_001522 |
| Alias | Gm06circRNA624 |
| Organism | Glycine max |
| Position | chr6: 28887394-28921659 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | Tophat, CIRI |
| Parent gene | GLYMA_06G222100 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | - |
| Alternative splicing | GLYMA_06G222100_circ_g.2 GLYMA_06G222100_circ_g.4 GLYMA_06G222100_circ_g.5 GLYMA_06G222100_circ_g.6 GLYMA_06G222100_circ_g.7 GLYMA_06G222100_circ_g.8 GLYMA_06G222100_circ_g.9 |
| Support reads | NA |
| Tissues | root, stem |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | KRH54967:28 KRH54968:28 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.010976866 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
28921637-28887396(-) |
| Potential amino acid sequence |
MSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWTFVNF AGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQ TAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLKGALR NAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARREQYPS TISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHM VLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSV IAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALLEYVR YDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNNDDPG ILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGVNALL HEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLHQRAW LLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRTVSKS KVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLIDLASF HDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEV SASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPGSLSS DNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDVPT TVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKTISLY VLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLLRISH KYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLVFSLT SLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIKESKE RIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWTFV NFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQS LQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLKGA LRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARREQY PSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHF HMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVN SVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALLEY VRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNNDD PGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGVNA LLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLHQR AWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRTVS KSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLIDLA SFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIV EVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPGSL SSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDV PTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKTIS LYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLLRI SHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLVFS LTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIKES KERIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVLWT FVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFK QSLQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPYLK GALRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEARRE QYPSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLK HFHMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPG VNSVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVALL EYVRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLENNN DDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKPGV NALLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSSLH QRAWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAIRT VSKSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRLID LASFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQ IVEVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLFPG SLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDP DVPTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPGKT ISLYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELALLL RISHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLRLV FSLTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSKIK ESKERIMSVLSPYRVVGSHDFAQDSNSSSLHGTEMGPLPFNSILDFVSEIYQKEPELLSGNDVL WTFVNFAGEDHTNFQTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEK FKQSLQTAGAMLPEIQEGDAKALVAYLNILKKVVENGNPTERKTWFPDIEPLFKLLSYENVPPY LKGALRNAIATFIKVSPVLKDSIWTYLEQYDLPVVVGLDIPNSPQSMGTQVYDMQFELNEIEAR REQYPSTISFLNLINALIAEERDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGAC LKHFHMVLSMYDIKDEDYEGVVDQSRLSATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILL PGVNSVIAERSSQLYGQLLENAVQLSLEIIILVLDKDLLLSDYWRPLYQPLDIILSHDHNQIVA LLEYVRYDFQPKVQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLELRSEELQNLEN NNDDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCMKVILDILEKLLKP GVNALLHEFGFQLLYELCVDPLTSGPTMDLLSNKKYLFFVKHLDTIGIAPLPKRNSNQSLRNSS LHQRAWLLKLLAVELHAGDVRSSNHREACQTILSYLFAHGLNDIGGGQAMPPFLLHDTSENAAI RTVSKSKVLELLEIIQFRCPDSTTQLSNIVAGMKYDLPAEDILGNPGNSGKGGVYYYSERGDRL IDLASFHDKLWQKYNSAYAQASNLGSEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAW SQIVEVSASRRLTMLEDRSEILFQVLDVSLSASASPDCSLRMAFILSQVALTCMAKLRDERFLF PGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVV DPDVPTTVLQFLLLSEQDNEYIDLPKIDKEQAELARANFSTLRKEAQSILNLVVKDATHGSEPG KTISLYVLDALINIDHERFFLSQLQSRGFLRSCFTAISNVCNQDGSLSLDSLQRACTFEAELAL LLRISHKYGKSGAQILFSMGILEHLASGRAINLQGSLRWVETRLRRDMAVDVDRQRMIITPVLR LVFSLTSLVDTSDFLEVKNKIVREVIDFIKGHQSLFDQVLRLDIAEADELRTEQVNLVVGILSK (-) |
| Sponge-miRNAs | gma-miR10420 |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017a |