Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc11g011420.1_circ_g.2 |
ID in PlantcircBase | sly_circ_003284 |
Alias | 11:4489225|4493646 |
Organism | Solanum lycopersicum |
Position | chr11: 4489225-4493646 JBrowse» |
Reference genome | SL2.50.38 |
Type | e-circRNA |
Identification method | Segemehl, CIRI |
Parent gene | Solyc11g011420.1 |
Parent gene annotation |
Peptidyl-prolyl cis-trans isomerase PASTICCINO1 |
Parent gene strand | + |
Alternative splicing | Solyc11g011420.1_circ_g.1 |
Support reads | 6 |
Tissues | fruit |
Exon boundary | Yes-No |
Splicing signals | GT-AG |
Number of exons covered | Solyc11g011420.1.1:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.375648605 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | sly-miR5304 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tan et al., 2017; Yin et al., 2018 |