Detail information of Solyc11g011420.1_circ_g.2


General Information
CircRNA Name Solyc11g011420.1_circ_g.2
ID in PlantcircBase sly_circ_003284
Alias 11:4489225|4493646
Organism Solanum lycopersicum
Position chr11: 4489225-4493646  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc11g011420.1
Parent gene annotation Peptidyl-prolyl cis-trans isomerase PASTICCINO1
Parent gene strand +
Alternative splicing Solyc11g011420.1_circ_g.1
Support reads 6
Tissues fruit
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Solyc11g011420.1.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAGGCTACAAGTGAAAATGTTGAAAAGGATGATCTTGACAATTTAGACGACCAAGAAGAGA
GAACTCGTCAGACTACAGTGCCTCCCCCTCCGCCAGgtgcgagatgtgcttggagacggacgcc
tcataaaacgccgaatacgtgatggaagaggtactgttgagacttaatccaagcataactttga
tttatata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCGAGATGTGCTTGGAGACGGACGCCTCATAAAACGCCGAATACGTGATGGAAGAGGTACTG
TTGAGACTTAATCCAAGCATAACTTTGATTTATATACCTCTTCGGCACCTCTCATCAGTCATCA
CTATGATCCGTCAAGTTCTGCTGAATATCTTAATCTGAAAAAGACAATTGAGTTCTGTTTTTGG
TTTTCTAATACTACTTTTATCAAAATCAAATAGTTTAAATGGGCTCCTACAATGCACTTTATTT
GTTTTTCATATGGTGATTCATCATGTTCCCTTGTTTCACACAGGACTTACTTCCCTTGGTTAAC
TTCCTTTTTCATGAATCTTGGTTATCATTTCAATTATTTAACTGCAGTATTTATGATTGACATG
GCAAGTGTCATCCCAAACTATTTTGAGAAGCTATAACTCATTTATTTTACTTAACCCAGTTTTG
CTTATTTTTCTCCTTTGGGGTAAATACAATTTAATTTGACATTACCTCAAATTTATTGAATCTC
TTAGACAACAATTATCCTCTAGTAATTTACCCTAGTTGTGTGGATAGCTTAAGGGTCGTTCTCA
CCTTCTGCACTTTATCCATTGGAAGGGACTTTTTGACTGGATTTAGCATCTTCAGATTGTCATT
ATCTTAGAGAATGGGAGGAGTGATGCCCAGCATTGAGGTGAAAAGACTTGGATGTTGTTTTACA
AAATGCATTTCGAATTATATTGCATGAGTCACGACACTCATTTTATGTTTTTATCTTATTGACT
AGTGTCTGATGCCGGCTGATCTATTTTATGACCCCTTGAGTCACGGCTAACACTTATTGACGGA
CAGTAGGTCCTTGACTATTATAGGTTTAAATGTTCTTAGTTAGGTACCAAGATCATTTTTATGC
TGGACTTTGTTATAGGATATTAACTGCATTCTTGGCAAGAAATGATAATTGTTTTGCTTGATTT
CTGTATGGAGTCGAGAGTTTGGTATTTTCTATTGGACCTGCTTGATAAGCTTCCTTGTCACTTG
TATTTAAGATGTGATGGAGGTGTTAGATGTTCTTGTCATTTCAATGCCATGTATACCTTTATGT
TCTTTTAGTCTTTTTGTCATTTTAGTCATGAGTTAAAAGTATCTATAATAAGGTTAATATCAAC
TGAAAAACTTTCTTACTTCTATGAAATGAATAGGTGAATTTCCTATGGATTGCCCTCTGCAAGA
CAGTCTACTGCGTGTACACTACAAAGGTTTGCTTCTTAATGAAGAAAAGACGGTGTTCTATGAT
ACAAGAATCGACAACAATGGTCAGCCTTTAGAGTTCAGCTCTGGAGAAGGGCTTGTAAGTCCTT
TGACCTCATAAAGTGATCTAATTCACTTATTTGTTTTATCTTTTTATATCACCTTGTAAGTATA
GCTTCCTTGTAAGGATTACTTTATGTAGGATGAAGTAAACGGTCTATTGCTTTTAAGTTTTTAC
TCTTTCAGTTTGTATGATTGAGTTCTTTATTTTTGACATCAGGTTCCTCAAGGATTTGAAATGT
CCGTTCGTTTGATGTTGCCTGGAGAGGTATCTCTTGTAACATGCCCGCCTGATTATGCCTATGA
CAAATTTGAAAGGTTAGTAGGTAGAAACCTTGTGCTTGTACTTTTACCCTTGGTTCTCCCCGAT
GAAATATGTCATCATAAACAGGTCTTTTCTGATGAGAAATTTCCACTACTTGTAACATTTTACA
ATCATTTTTCATGGGCTCAGGCCAGCTAATGTTCCTGAAGGTGCTTATGTGCAATGGGAGATTG
AGCTTCTCGACTTCAACACACCGAAGGTAGAGTTACTAATAGTGGCGACGTAGAAAATAGTATG
ATAGGGTGAGATAAGGGGAAAGAATTAGTGTGTAGCGGTGAAGATTTTCATTTGTTGATTTCTC
TAGTTAATAGGATTGAATCCGTGTGCTCTCCATGCAAATTGCAGGACTGGACTGGTTTCAGTTT
CAGAGAAATAATGGACGATGTAGAGAAGATCAAAGGCACGGTATGTATTAAACAAATACGTTCA
GAATCTTTGAGTAATACAGATAATCTGAGTAATACAGATAATCTGCTTCTTTTTAAATTATTAT
TGAGTTTCCACGGTAAATACATGTCTATAGCTTGGAGTATGATTTTGAATGCTCATCTGTCTAA
CAAACGGGTGCTTTGTCATGACATTAATCTCAGTGCTCGGACTAGATTTTAGCGCCATAATTGT
TAACCTATAATCTGGATATTTATCCCTTAAGAAAGTTTGCTTTTTAGTTGGAAATCCGATAGTC
TCATTCTCGCTTTAGTCTGTAATACCTGGATAAAAATGGTTACCAAACTAGTATACATTTTATG
GGAAGTCATTTGCTGCAACGTGTTCCTTTTTCAGGGTAACAGGCTTTTCAAGGAAGAGAAATTT
GAACTTGCCAAAGCAAAGTATGAGAAGGCAAGTGTGGTCTTCTCCTCTCTGGATCTCTTCACCA
ATTGATTTTTCCTTTCACTAGTTAAGATTGGAGCTGTATCCCATTCTGTTGTCATTCAAGGAGG
ACTTAATAACGTTACTTTTTTTTTGTACTTTAAGCATCATGATCCAATTTAACCAAGACTGTAT
TTCTAGGGCAAGCAAAAATCTCTAATGAACTGTTTTTGCGACCAAATAAGTTTCTTAAGTTATT
TGTTTTCTTATGAACATCAGAGTTTTAATACTTAAGGTTAAGATTCAGTGCTTTCTGATCACTG
TTTCAAAGAATCAAGTATACTGGAATTTGCTTTCTATAAATAAATATCGGTTCGAAATTAAAGA
TGTTGCTAGTAATTGATTTTCAAGGTACTTCATACTTGTGAGAAACCAGGGTCCCATATAGGTT
GGATTTTCCATTTTATGCAGCATTTCTATTTGGATCGATGAGGAATTCTAAACTTTAGGGTAGA
TTTTAAAATTGTTTTTTTCTTACAGGTACTTCGTGAGTTTAATCATGTTCATCCTCAGGATGAC
GAGGAAGGAAAGGAATTTGCAAACACCAGGGTAATTTTGTTTGCTGAACAGATTTTATTGCTTT
TTTTTTCAAAAGGAGGAAAATTTTGCTTTCGTTACAGTTGAAATGATTAGTTATATTTCTTTTC
TGTCAATGTTTGACTCCTGTAGGCTTTTCCTTTTCTTCCTTGTGAATGAATGTACACAGAATTT
GTTGCATCTCAATGTTGCTGCCTGCTTACTGAAATTGGGAGAGCATAAGAAGTCTATTGAGACG
TGCAATAAGGTGACCCTCAAACTATGTGCTAGCAGGAATATATGCAGGCCTCCCTTTTTCCATA
TCCAATTAGACTCGTTCTGGTGGTCTTGTGTAGGTGTTAGATGCGAATCCGGTTCATGTGAAAG
CTCTCTATCGACGTGGGATGGCTTACATGGCTTCTGGAGATTATGAAGAAGCAAGAGCTGATTT
TAATAAGGTTAGTTTCTTCTTCTTCTTCTTCATCTTGTATTTAGGCAATTAGTGCAAAAGGTTC
TGGGGTATTTGGAATTTCATAAACGCGGAACTCGCTCTGTTGACTGTATTGGTCCTTGAATTGG
ATAGTCCCTCAACTTTCAAATGTTCTATGTCCTTCCAGGTTTCCGCTATCATTTTGTGAGAAAT
GCCATTTACAATGGCTAATGTTAGTTAAAGATTGTAAATATTTTAAAAAGTCTTTCCCTGGTTT
TGGAATAACTAACATGGAACACCATCCCCACAAGTCTTTATCATCAATGTTGGCTGCAATACTA
GCAAATACTGAGTGACGTAAATACCAACCCTCAGTCTTTATCATCAACGTTGGCTGCATTGACT
AGTAAATACTGAGTGGTGTGCTCACGCGGAATGTTATTATAAGAACTTTTCTTTATCATCAACG
TCAGCTGCAATGACTAGTAAATACTGAGTGGTGTGCCTCACGTTGAATGTTATTATGAGAACTC
TTAATGAGGTCATTAAAGTTTGGGTTATTGTACTACAGAGTTAAAATGTTAAGTTTTATCCTGA
TATTAGATGCCAATATGTCGTTTTAAGTTACACGTCCAATGCTTGTAGATGATGAGCATCGACA
AGTCATCTGAGGCGAGTGCAAAGGCAGCTCTTTTGAAACTTAAAAAGGAGGAACAGGTTTGTCT
TTGTACTATGCATGAACTTTATTCATTTGAAGCTTTTTGACTCTAAATTTCGATCATTTGGGCG
AGCAGGAAGTCGAGAGGAGGGTTCGTAAGCAATTTAAGGGATTGTTTGACAAAAGACCTGGAGA
AATCGCAGAAGTTGGGACTAATGATGGACAAGATGATGAGGCTACAAGTGAAAATGTTGAAAAG
GATGATCTTGACAATTTAGACGACCAAGAAGAGAGAACTCGTCAGACTACAGTGCCTCCCCCTC
CGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.375648605
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs sly-miR5304
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017; Yin et al., 2018