Detail information of Os04g0409200_circ_igg.1


General Information
CircRNA Name Os04g0409200_circ_igg.1
ID in PlantcircBase osa_circ_023750
Alias NA
Organism Oryza sativa
Position chr4: 20240223-20242691  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0409200_circ_g.1 Os04g0409200_circ_igg.2 Os04g0409200_circ_g.3 Os04g0409200_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACcgggctactcattccaatatgtgattca
tatatccgcagcgaatttggtcgtttaggttgaggatgttggaatacatatttttcctgcagtt
gcgtataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGCTACTCATTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTGAGGA
TGTTGGAATACATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAAAGGT
TAAAATGGAATATCCTGATCAACAAAGAAAAAAAGTAGTATTACACAGTTCTATAAGGTTTTAG
TGACACGAGCATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGACTGTAA
GGTAGAAACATACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCTGGAGC
CTGCACAGCAAACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCATCCGA
ATCTGGAAATTAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTAAACCC
TCAACTAAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGG
GATCCATCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCATACTCATTCTGAAAGTGATCAT
GCCATATATCAACACTAATAAGAGAAAAAACGTTGCTGGCACATGTAAATAGGCTCGTATGCTG
CGAAATACACCCTTCTCATGTCATATAATAAACCAGTGTGGATGGAAGTGTACAAAATTCAAGG
CGATGTTTGGAAAATGGGTTTGGGATATGATTTCCCACCCCCAAAGGGTAAGTTTTGATCTTAG
CCATCCATTCATTTCACCCATTTCATCCTATCCCTCCATTCATTTCCATTTCCCAATCCCACCT
CTCCTAACCCATTTTCCAAACACACCCCAAAAGGCTATATTAACCATTAGGATGCAAAATTGCA
TGCATGTGTTTACTGTTTACCCTAAACATGAATTCTGCTATTTTGGACTCAAAGAAGATGATAG
TTAGTAAAGTAAGGAACAGTGCTCTGTTTTCACTGACTTTGAGACAATATAGAGTAGCAGCATT
TTAGAATGACACACGTGAGGTTCAACTTTAAGGAATATAAACAGAAATAATGAACCCAGATAAT
TGAAAATATATTAATGATACAATACAAAGATGGAAAATAAAAAGGTTGAAGACGTACTCTGGTC
ATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGCAATAGGA
TGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAATATATCAT
TTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAATCACGTAC
CTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGAATAATGA
TATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGCATTTCTGTAGTAATGCGACTT
TAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAGCCACCTT
CATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCACCATGCAT
ACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATATCAGAAA
TTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCACATCCTT
TTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACCTCTATTT
TCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGTCAAGATG
GTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGGTGGTGGG
ATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCAGTCACAT
TTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCTTTATGCT
TGCTTCTGCCACTGCTGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATCATCAGGT
ATCTACACAGAACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAAGGTACATT
CTTTTGTGGCAAAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACAGCCAGCAC
AAGGTCACAATGCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATCACACATTT
GGTCAGTGAATGACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCAGGTTGCTC
TTGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGC
ACCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.123977589
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017