Detail information of BGIOSGA001873_circ_g.4


General Information
CircRNA Name BGIOSGA001873_circ_g.4
ID in PlantcircBase osi_circ_008995
Alias Chr12:25701390_25702180(MH63RS2), Chr12:26650187_26650978(ZS97RS2), Chr12:25701390_25702180(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11184100-11184889  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA001873
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001873_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001873-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTGAAGGAATCCGAACATGATGTATATCTTGCCCAAAGTAGTTCAGTGGTAGAATTCCAAAC
ACACACAGAATGGCAGCTAGAGAGAAGATGCGTAAGccattatcttctgaacttttccaacttt
gtaaacaacttgatggaacaggtagcttgatccatggtacttggtgaagaaatcatcaatagca
ttactgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATTATCTTCTGAACTTTTCCAACTTTGTAAACAACTTGATGGAACAGGTAGCTTGATCCATG
GTACTTGGTGAAGAAATCATCAATAGCATTACTGCATGATTCTTTGGTTTCCTTTGGTATTCCA
CGAACAAGGACAGTAAAATGGCTTGGATTGGGCATTGCACAAGTAAGATGACGGAGCCTCAGCC
TAGCAATGTGCTTGTACTCCTAAATTATCAGACAAATAATGTTATATCAAATCTGCTCCTCAAT
ATGAGGAATGAGAATGTTTCAATTACTCCTAAGAGAAAAAGGCCTTACAAGATATAGGAGAATG
CAAGCTACTCCTGATATTATGTACAAGGCTACACAATGGACCCAAAGCCTGCAATGCAACCGGC
ATATAAATCATATCTTTCTCAAAAAAAAAAAACAAGAAGAAATTATTGATTCTATGAAAGTACT
TTTGATGACAAATCTATTTTCACATGTCTTTTTTTTTTTGCATTTATTAGTGATTTGATTGCAC
ACATTCTAAAATGTCGTCTATTTGAGAGCGGAGGGAGTTCTCTAAATGCCAGCACTCAAGAGGC
GTAAATGTCATGTAGAACATTGGTTAAACTACCCTGTAGTAAAACTACAAGAAGTTTCTCATCT
CACCATCTTGATCTCACTTTCACATTCCCAATTGTAAAGATATCCAATGATTCTGAAGGAATCC
GAACATGATGTATATCTTGCCCAAAGTAGTTCAGTGGTAGAATTCCAAACACACACAGAATGGC
AGCTAGAGAGAAGATGCGTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021