Detail information of BGIOSGA001873_circ_g.5


General Information
CircRNA Name BGIOSGA001873_circ_g.5
ID in PlantcircBase osi_circ_001987
Alias 1:11184101|11184889
Organism Oryza sativa ssp. indica
Position chr1: 11184101-11184889  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA001873
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001873_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA001873-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTGAAGGAATCCGAACATGATGTATATCTTGCCCAAAGTAGTTCAGTGGTAGAATTCCAAAC
ACACACAGAATGGCAGCTAGAGAGAAGATGCGTAAGcattatcttctgaacttttccaactttg
taaacaacttgatggaacaggtagcttgatccatggtacttggtgaagaaatcatcaatagcat
tactgcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTATCTTCTGAACTTTTCCAACTTTGTAAACAACTTGATGGAACAGGTAGCTTGATCCATGG
TACTTGGTGAAGAAATCATCAATAGCATTACTGCATGATTCTTTGGTTTCCTTTGGTATTCCAC
GAACAAGGACAGTAAAATGGCTTGGATTGGGCATTGCACAAGTAAGATGACGGAGCCTCAGCCT
AGCAATGTGCTTGTACTCCTAAATTATCAGACAAATAATGTTATATCAAATCTGCTCCTCAATA
TGAGGAATGAGAATGTTTCAATTACTCCTAAGAGAAAAAGGCCTTACAAGATATAGGAGAATGC
AAGCTACTCCTGATATTATGTACAAGGCTACACAATGGACCCAAAGCCTGCAATGCAACCGGCA
TATAAATCATATCTTTCTCAAAAAAAAAAAACAAGAAGAAATTATTGATTCTATGAAAGTACTT
TTGATGACAAATCTATTTTCACATGTCTTTTTTTTTTTGCATTTATTAGTGATTTGATTGCACA
CATTCTAAAATGTCGTCTATTTGAGAGCGGAGGGAGTTCTCTAAATGCCAGCACTCAAGAGGCG
TAAATGTCATGTAGAACATTGGTTAAACTACCCTGTAGTAAAACTACAAGAAGTTTCTCATCTC
ACCATCTTGATCTCACTTTCACATTCCCAATTGTAAAGATATCCAATGATTCTGAAGGAATCCG
AACATGATGTATATCTTGCCCAAAGTAGTTCAGTGGTAGAATTCCAAACACACACAGAATGGCA
GCTAGAGAGAAGATGCGTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 11184264-11184404(-)
11184864-11184154(+)
11184787-11184110(+)
Potential amino acid sequence MPNPSHFTVLVRGIPKETKESCSNAIDDFFTKYHGSSYLFHQVVYKVGKVQKIMLTHLLSSCHS
VCVWNSTTELLWARYTSCSDSFRIIGYLYNWECESEIKMALGPLCSLVHNIRSSLHSPIS*(-)
MAAREKMRKHYLLNFSNFVNNLMEQVA*(+)
MILKESEHDVYLAQSSSVVEFQTHTEWQLERRCVSIIF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021