Detail information of Os12g0566800_circ_ag.3


General Information
CircRNA Name Os12g0566800_circ_ag.3
ID in PlantcircBase osa_circ_012022
Alias NA
Organism Oryza sativa
Position chr12: 23304636-23309629  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0566800_circ_ag.1 Os12g0566800_circ_ag.2 Os12g0566800_circ_ag.4 Os12g0566800_circ_ag.5 Os12g0566800_circ_ag.6 Os12g0566900_circ_g.1
Support reads 3
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCCCTTTTGGAAAGTAAACACATTAATATAATGCCGACAATCATGCAGCCAAGAAACACAAC
AAACAGCAGACTTTTCCCCGTGACACTTCCTCCATCctttccatctctcagtagtgcaagagag
atcagatttccgatgacctgcataattcgaatgttgtattaagtcatagacaccttgtatctgt
agagccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCATCTCTCAGTAGTGCAAGAGAGATCAGATTTCCGATGACCTGCATAATTCGAATGTTG
TATTAAGTCATAGACACCTTGTATCTGTAGAGCCCACATGTGCAGAAAGAAATACTAGTAGACG
CTGCGCTTGTGGTATGAAGAACGAATACTAAAATATGTCTTGGCAAGTTTTGGTGGAGAATAGC
TTTGTACGAGTACGACCAGTCGACCATACCTGTGTGCTAGCAAACATTCCCCAGAACTCTCCAT
TGAAGTTCCCCAAAGTTTGGCCTTCAGGCAAATTATTGTCTCTTGCATGACTGAGGGCAGCAGA
CGTGAGATATGTACCCTGCAGTGTGAGATATATTATGTGAGCTGGATTACTGGATGCAACAGAA
GACTTCACAAGCTCACTGGCAAGTAAATACCTGCCCAACCCAGATGATCGATGCAGAAAAACCC
AGATACAGGGAGGCTGGCACCATTGTGTACCTGACAATTTGTTGTGCAAATTAACATCCATATA
TAGAATCTCAGCATACCTTAAATATAATGTATTCATTTTTAATAATATTTTGCACAGCTGAATC
ATTTAGTAGTATATTAGAAAGCACATCAACTAGGGCCAAAATCCATCGGCCATCCATATCTTTT
GAGAGTGCTATATATAAAAGAAAATGAAACATGTTGCTGGTAAATAGTCTAGTAGAAAACTTGT
CGATAGTTTTAACTAGGAGTAATTCGCTACATGTGCTACTTCAGATTTCACTCTCAGCTACACC
AAAAAAGGGTAACACAGCATTTGATTACCAGAAAATGGAAATGCCCTCCGTCCACAACCAAACA
CTCAAAATAAACTGGTGAGACCGCATCCCGAATCAAACATGAGCTACACACTACACCGCCAAAT
TAAGACTATATGATCGATTAAGATCAGTAATACCAGTGTCTGAGCGAAAGGAGCATCATATCAA
CACGGTCTAGCTAGCTAGGCATTTCATCAAACAGGCGTGAGGCATCCAAACCAGCACGCCCAAT
TAGGCACCAGCGCTACCATGCGCGGGACGGTCCATGTGAAAACTCAAAACCATGCGATTCATAG
GCGAGCGCACGCACCATGTCGGGACGAGGTTAGCGAGGATGAAGATGACGTAGCCGCTGGTGCC
GACGACGAGCGCGCGCTTGGAGCCGAGCCACGTGACCACGGGCGACGCGGTCACCGCGAAGAGC
GTGAAGGAGGTGTACAGGATCCCCATGGACACCGTGCCCAGGTCGCCCTCCTGCAGCCAGCATC
ACCCACGGATCAGGAAAGGCGGCGATCGAGATCAGCTCGAGACCGATCGCCGACGACGACGAGG
ACGACGAGAGATGCACACTCACGGTGTTGACCGAGCTCTGGAGGTTCTGCGCGGCGCAGTAGGC
GGAGAAGATGAAGAGGAACGCGGCGGAGAGGACGTGCAGGTCGCCCGCGTGGCTCCAGCGGTGG
CCCGAGTAACCCAACGGCGCGACGCCGGCGAGGAGCGGCGCCGTGGCACCCCCGTCGGCGCCGG
CGCCGGCCGGCCGCCTCCTCATCGCCTTCGTCGTCGCGGTGGTGGCCTCCTCGCGCGTCCATGG
CCCGCGGCGGCGGAGGCGGAAGCTTCTAGAAGCGATCGATCCGCGCGGCTTGAGGGTTGAGGCG
GGAAGCTTCTTCTAGAAGGTTTTTTTTTTTTATATAGATAGAGGAGGAGACGAGGACCGGCGAC
GGCGAGGAGAGTGGAGCGGAGGCGGCGAGGTGGGGCCCACATGGCGGTTTGTACCTACCTGCAT
GTGGGGCCCACATGGCGTTTCCTTCCTGTCCCCGCCTCTTCTTGTCACTTCGTCAGTGGCCTTC
GAAGATTCTTTTTTTCTTCTTCACTTCTATTTTTCAAATATGTTATTTGAATACGGAGTATATG
GTATTCACTTGTTTAAAAGAAATATTAAAATATTCTATAATATTACTACATCCGTTCAAAAAAA
GACTGCAGTTTTACATATTTTCATATCCAACGTTTAACCGTCCGTCTTATTTGAAATTTTCTTA
TGATTAGTATTTTTGTTGTTATTAAATGATAAAATATTAATAGTATTTTATGTGTGACTAATTT
TTTAGTTTTTTTATAAATTTTTCAAATAAGACGGATGGTCAAATATTGAACACATAAACCCTCA
ACTGCATTTAAAATGTGACGGAGGTAGTAATAAAATTTTAAGGGCTAATTTATAAAAAAGTGTA
AAAGAATGTTGAGGTGGTAGTGCCACCACCATATTTTTAAAGGAGTATAGATTTTGATGTGCAC
ACGAACGAGAGAGCCGAGAGCAAATCAAAATCAAGAATTGATTTGCGATTTGCGTTGTTTTTCT
TGTTGTGGTGCAGGAGGATGTGGGGTAGACCGATGGAGTGTGTGGGTCCCGTTCGTTTCCACTA
CAAAGAGTGGATAAATTTTTGGATATTCGTGATATTTTAAACTACTAAACGGTGCGTTTCGTGT
GAAAACTTTCTATATAAAAGTTGTTTTAAAATATCAGATTATTTTTCAAGTTTGTAATAATTAA
AACTCAATTAATTACACATTATTACCACCTTGGTTTTGTGTGAAACACTTAATCTTTATCTTCA
TCTTCATCTTTAGAAGATTCAAACACCACCTGCGTTGTTTTTTTCTCCAACAAAAGTTGGATAA
ACTTTTGGATACTCGTAGCACGTTTTTCAAACTGCTAAACGGTACGTTTCTTGCGAAAACATTC
TATATGAAAGTTGTTCTAAAATATCAGATTAATTCATTTTTTAAGTTTATAATAATTAAAACTT
AATTAATCACACGTTATTACCACCTCGTTTTGCGTGAAACACTTAATCTTTTTCAGAAGATTCA
AACACTACCTTAGTGACGCCGATAATTTGGGAAAATATTGACTTCGTTGAAAGTTGAGCAGAGA
TTTTATTAAATGATTGGGAAGTGTACAGCGACTATATCGACAACGATCTTTGGTCATGTTGTTT
TCTGGCTTATATTTGGTTTGGAATTTCTTGTTTTCAAACAGATTTAATCAAATGTACACTTCTG
GAGCATCGTTTCGACATATTTGCAAACGAAAAGTAATTTATGAATAAAACTTTTATATACGTGT
TCTTAACGATTTAAAAGCAAAGGCAGAAAAATAAACTTCGATGAAAAAAAATCTCAAAATCAAC
TCTAAATTTAAGGTTGAAAATTCAAATTTTGACTGATAAGCATAAGCATAAGAAAAAGATGAGG
CCCTTCATATATTAATGACCGAAGGAGTAACCTTCTTCTTTTTTTCATCAAACCACGTCGAAAT
AACACTCATCCTTTTTCAGAACAAAAGAGCAGCTATTATAAACATATATATTTGACTGATGTTA
CATTTGGTAGAAACAACCACGGAACAGAAACAACTGGAGGAAAACAGATTTTGCTACAAGGCCG
TCACTCTAATTTTGAATGCAATCACTTCAATTCAGCAAAAATCGCTGAAACAAATGGAGTCAGG
GTGGTGTTGTGTTGCACATCAACTGACAGATACCTCATTTCCTTTTGGTTTCGTATCGCTCGTG
CATACAGTATGTGCTGCTTTGGTTGTTGGTAACACTGATCAAGATATGTGGTGAAATTGGCCCC
ACTTTGGAATTGGTTTCTGTTGGACAAAAGGATTTCGGATTTCCTCACGATCTGACGGTCGATG
GCTTCTCCACAACAAGTGTAAGTAACAAGAATGCGCCGAAAGAGATGATGAGCGCAGTGGCCAT
CAAGATAAGCATGGCTTGTAGCGTAATATTTGGGCTCAGGAAGAAGATGACTGCGATGGCACCC
GATTGCCAAACCTTCAACTGTGCAAAAGCTGCCTCCTGCATTTGACATTTTTCCAAAATAATCA
TTTCAGTATCCATTTAAGTATCAGCAAATGAAATGCCATATATTATATTTTTCCGTCATCGATA
GGAAGAACGCTACCGTGCTGATGAAAAGCTAAAGAAAACTAAAACGATATTACCTTGACATCCT
CGAACAGCAGCCCAAGTAATGCACTTAACTGTGTATTCAAGACACCATCACCAACACCCCATAA
GGCACCTATAAACAGTGGAACTGCTGCACCAAGCAGTCCACCCATTGGACTGTAGGCAATAGAA
AGATGAGCTCACTGTGATACCAATGGCAAGCATAACTGCAGAAGAAAGGTGTAACAGCACAGTG
ACGATTAACGAAACCAAACCTGTAAAAAAGAAGTAACCAGAACAGGACTACAGCCTGAAGAATA
GCTCCAACCGAAACGATAGATGTAGCTGAATGAAGCCCAGAGGTCAAACGTCCAGCAACCAATG
AACACTGCAGTGTCAGGTAACCATCAAAAGTCAGCTAAAACATAAATTATGGCATTTTCAATAG
TTTAGCATGATATAGATTAGTTATAGATAACTGGGAAACAAGATATGCCATACTTTCACAAAGC
AATAGCAACAGTAGGACCCTAGGGAAAGGATAATAGAGAGTTCATAGTGAAATGGCATCAGGCT
ATGCTAACAACTTTAGTGATTTAAACTTACAACAACATCGGCTGCACCATATATTGCCATGGCT
CCGCCAACGCCAGAGATGCCAAGCACAGGTGTTACAATATTTTTCGTGAAAACAGCCCTAAAAA
TTACACAGCATTATCTTACAGAGCACATAATAAGAAATCAAACAGCAACAAATGTCGAAAGGCA
ATATGCGCTACAAAGTACTTACCATACAAATGCCTGTTGTAATCCTGAATATGCAATAAGAGGG
ATGATAAGAATCATCCTTCGGTCCTTGAGAGGGGCAACAATATACTTCATCATAGCCCCAAATG
AGGAATGTGTTGGAGCATTATTTCCTTTCTCGTCCCTTTTGGAAAGTAAACACATTAATATAAT
GCCGACAATCATGCAGCCAAGAAACACAACAAACAGCAGACTTTTCCCCGTGACACTTCCTCCA
TC
Conservation Information
Conserved circRNAs osi_circ_009841
PMCS 0.797641841
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR528-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017