Detail information of Os12g0566800_circ_ag.6


General Information
CircRNA Name Os12g0566800_circ_ag.6
ID in PlantcircBase osa_circ_012025
Alias NA
Organism Oryza sativa
Position chr12: 23305738-23310726  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method KNIFE
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0566800_circ_ag.1 Os12g0566800_circ_ag.2 Os12g0566800_circ_ag.3 Os12g0566800_circ_ag.4 Os12g0566800_circ_ag.5 Os12g0566900_circ_g.1
Support reads 8
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAGAAGACTTATCAAGCACACTGTCAAGTAAATACCTGCCCAACCCAGATGATCGATGCAGTA
AAACCCAGATACAGGGAGGCTGGCACCATTGTGTACcatgtcgggacgaggttagcgaggatga
agatgacgtagccgctggtgccgacgacgagcgcgcgcttggagccgagccacgtgaccacggg
cgacgcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTCGGGACGAGGTTAGCGAGGATGAAGATGACGTAGCCGCTGGTGCCGACGACGAGCGCGC
GCTTGGAGCCGAGCCACGTGACCACGGGCGACGCGGTCACCGCGAAGAGCGTGAAGGAGGTGTA
CAGGATCCCCATGGACACCGTGCCCAGGTCGCCCTCCTGCAGCCAGCATCACCCACGGATCAGG
AAAGGCGGCGATCGAGATCAGCTCGAGACCGATCGCCGACGACGACGAGGACGACGAGAGATGC
ACACTCACGGTGTTGACCGAGCTCTGGAGGTTCTGCGCGGCGCAGTAGGCGGAGAAGATGAAGA
GGAACGCGGCGGAGAGGACGTGCAGGTCGCCCGCGTGGCTCCAGCGGTGGCCCGAGTAACCCAA
CGGCGCGACGCCGGCGAGGAGCGGCGCCGTGGCACCCCCGTCGGCGCCGGCGCCGGCCGGCCGC
CTCCTCATCGCCTTCGTCGTCGCGGTGGTGGCCTCCTCGCGCGTCCATGGCCCGCGGCGGCGGA
GGCGGAAGCTTCTAGAAGCGATCGATCCGCGCGGCTTGAGGGTTGAGGCGGGAAGCTTCTTCTA
GAAGGTTTTTTTTTTTTATATAGATAGAGGAGGAGACGAGGACCGGCGACGGCGAGGAGAGTGG
AGCGGAGGCGGCGAGGTGGGGCCCACATGGCGGTTTGTACCTACCTGCATGTGGGGCCCACATG
GCGTTTCCTTCCTGTCCCCGCCTCTTCTTGTCACTTCGTCAGTGGCCTTCGAAGATTCTTTTTT
TCTTCTTCACTTCTATTTTTCAAATATGTTATTTGAATACGGAGTATATGGTATTCACTTGTTT
AAAAGAAATATTAAAATATTCTATAATATTACTACATCCGTTCAAAAAAAGACTGCAGTTTTAC
ATATTTTCATATCCAACGTTTAACCGTCCGTCTTATTTGAAATTTTCTTATGATTAGTATTTTT
GTTGTTATTAAATGATAAAATATTAATAGTATTTTATGTGTGACTAATTTTTTAGTTTTTTTAT
AAATTTTTCAAATAAGACGGATGGTCAAATATTGAACACATAAACCCTCAACTGCATTTAAAAT
GTGACGGAGGTAGTAATAAAATTTTAAGGGCTAATTTATAAAAAAGTGTAAAAGAATGTTGAGG
TGGTAGTGCCACCACCATATTTTTAAAGGAGTATAGATTTTGATGTGCACACGAACGAGAGAGC
CGAGAGCAAATCAAAATCAAGAATTGATTTGCGATTTGCGTTGTTTTTCTTGTTGTGGTGCAGG
AGGATGTGGGGTAGACCGATGGAGTGTGTGGGTCCCGTTCGTTTCCACTACAAAGAGTGGATAA
ATTTTTGGATATTCGTGATATTTTAAACTACTAAACGGTGCGTTTCGTGTGAAAACTTTCTATA
TAAAAGTTGTTTTAAAATATCAGATTATTTTTCAAGTTTGTAATAATTAAAACTCAATTAATTA
CACATTATTACCACCTTGGTTTTGTGTGAAACACTTAATCTTTATCTTCATCTTCATCTTTAGA
AGATTCAAACACCACCTGCGTTGTTTTTTTCTCCAACAAAAGTTGGATAAACTTTTGGATACTC
GTAGCACGTTTTTCAAACTGCTAAACGGTACGTTTCTTGCGAAAACATTCTATATGAAAGTTGT
TCTAAAATATCAGATTAATTCATTTTTTAAGTTTATAATAATTAAAACTTAATTAATCACACGT
TATTACCACCTCGTTTTGCGTGAAACACTTAATCTTTTTCAGAAGATTCAAACACTACCTTAGT
GACGCCGATAATTTGGGAAAATATTGACTTCGTTGAAAGTTGAGCAGAGATTTTATTAAATGAT
TGGGAAGTGTACAGCGACTATATCGACAACGATCTTTGGTCATGTTGTTTTCTGGCTTATATTT
GGTTTGGAATTTCTTGTTTTCAAACAGATTTAATCAAATGTACACTTCTGGAGCATCGTTTCGA
CATATTTGCAAACGAAAAGTAATTTATGAATAAAACTTTTATATACGTGTTCTTAACGATTTAA
AAGCAAAGGCAGAAAAATAAACTTCGATGAAAAAAAATCTCAAAATCAACTCTAAATTTAAGGT
TGAAAATTCAAATTTTGACTGATAAGCATAAGCATAAGAAAAAGATGAGGCCCTTCATATATTA
ATGACCGAAGGAGTAACCTTCTTCTTTTTTTCATCAAACCACGTCGAAATAACACTCATCCTTT
TTCAGAACAAAAGAGCAGCTATTATAAACATATATATTTGACTGATGTTACATTTGGTAGAAAC
AACCACGGAACAGAAACAACTGGAGGAAAACAGATTTTGCTACAAGGCCGTCACTCTAATTTTG
AATGCAATCACTTCAATTCAGCAAAAATCGCTGAAACAAATGGAGTCAGGGTGGTGTTGTGTTG
CACATCAACTGACAGATACCTCATTTCCTTTTGGTTTCGTATCGCTCGTGCATACAGTATGTGC
TGCTTTGGTTGTTGGTAACACTGATCAAGATATGTGGTGAAATTGGCCCCACTTTGGAATTGGT
TTCTGTTGGACAAAAGGATTTCGGATTTCCTCACGATCTGACGGTCGATGGCTTCTCCACAACA
AGTGTAAGTAACAAGAATGCGCCGAAAGAGATGATGAGCGCAGTGGCCATCAAGATAAGCATGG
CTTGTAGCGTAATATTTGGGCTCAGGAAGAAGATGACTGCGATGGCACCCGATTGCCAAACCTT
CAACTGTGCAAAAGCTGCCTCCTGCATTTGACATTTTTCCAAAATAATCATTTCAGTATCCATT
TAAGTATCAGCAAATGAAATGCCATATATTATATTTTTCCGTCATCGATAGGAAGAACGCTACC
GTGCTGATGAAAAGCTAAAGAAAACTAAAACGATATTACCTTGACATCCTCGAACAGCAGCCCA
AGTAATGCACTTAACTGTGTATTCAAGACACCATCACCAACACCCCATAAGGCACCTATAAACA
GTGGAACTGCTGCACCAAGCAGTCCACCCATTGGACTGTAGGCAATAGAAAGATGAGCTCACTG
TGATACCAATGGCAAGCATAACTGCAGAAGAAAGGTGTAACAGCACAGTGACGATTAACGAAAC
CAAACCTGTAAAAAAGAAGTAACCAGAACAGGACTACAGCCTGAAGAATAGCTCCAACCGAAAC
GATAGATGTAGCTGAATGAAGCCCAGAGGTCAAACGTCCAGCAACCAATGAACACTGCAGTGTC
AGGTAACCATCAAAAGTCAGCTAAAACATAAATTATGGCATTTTCAATAGTTTAGCATGATATA
GATTAGTTATAGATAACTGGGAAACAAGATATGCCATACTTTCACAAAGCAATAGCAACAGTAG
GACCCTAGGGAAAGGATAATAGAGAGTTCATAGTGAAATGGCATCAGGCTATGCTAACAACTTT
AGTGATTTAAACTTACAACAACATCGGCTGCACCATATATTGCCATGGCTCCGCCAACGCCAGA
GATGCCAAGCACAGGTGTTACAATATTTTTCGTGAAAACAGCCCTAAAAATTACACAGCATTAT
CTTACAGAGCACATAATAAGAAATCAAACAGCAACAAATGTCGAAAGGCAATATGCGCTACAAA
GTACTTACCATACAAATGCCTGTTGTAATCCTGAATATGCAATAAGAGGGATGATAAGAATCAT
CCTTCGGTCCTTGAGAGGGGCAACAATATACTTCATCATAGCCCCAAATGAGGAATGTGTTGGA
GCATTATTTCCTTTCTCGTCCCTTTTGGAAAGTAAACACATTAATATAATGCCGACAATCATGC
AGCCAAGAAACACAACAAACAGCAGACTTTTCCCCGTGACACTTCCTCCATCCTGGAGTAACAA
GGAATCACATGATCAAGCATGATTTTTATTAAGAACATAAAAGGTTTCAAAATTTAACAAAAGT
CATACAGACTTTTAACTAGTATATTGATGAACAGTTTGAACAAATACTTTTGGGGGTTTAGACT
TTTGAGTATTGCTAACCTCAGGAGTCAGGGCATCTTATAATAGTTAAGTTCATGGGAAATTAGA
GTAGGACAGCTAATATTTTAGATATTTATTTTAAAATGTACATCTAAAAGATAAATATTAAGAT
TTATTTTCAGTAGTGCTCATTGCAATTATTCTATAGTTCTCTTGTAGTGTGCTGCAATATTTTT
GTTTGCAATCATTATTTTGTTACAACTAATATATCGATGCATTTTGAGACAATTTTGTAAACCT
AGCAGAACACATATTTTGAATTGGGTATAGAGGTACAACAGAAGTTTCCAGGATAGAATAAAAG
AAACAATGGGACTCTCCAGTTAACATCAGAACTATATTTTCTCTTACTGCAACAAATCATGATG
CTAAAAGTACGTATCATGAAGTTCACTTTAGTTACTAGTTAGCGGTACACAATATATAACAAAT
GACAGTCCAGGATATTCTGATAAGACATGAGAAGATCAAAATTAAGATGCTAACCTTTCCATCT
CTCAGTAGTGCAAGAGAGATCAAATTTCCAATGACCTGCATAATTCAAATGTAAATAGTCAAAG
ACACCTTGTATCTGTAGAGCCCACATGTGCAGAAAGAAATAGATGCTACACTTGAGTTATGAAG
AACAGATACTAAAATATGTCTTGGCAAGTTTTGGTGGAGAATAGCTTTGTACAACCATACCTGT
GTGCTAGCAAACATTCCCCAGAACTCTCCATTGAAGTTCCCCAAAGTTTGGCCTTCAGGCAAAT
TATTGTCTCTTGCATGACTGAGGGCAGCAGACGTGAGATATGTACCCTGCAGTGTGAGATATAT
TATGTGAGCTGGATTACTGGATACCAGAGAAGACTTATCAAGCACACTGTCAAGTAAATACCTG
CCCAACCCAGATGATCGATGCAGTAAAACCCAGATACAGGGAGGCTGGCACCATTGTGTAC
Conservation Information
Conserved circRNAs osi_circ_009844
PMCS 0.781135999
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR528-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017