Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0197400_circ_g.2 |
ID in PlantcircBase | osa_circ_018371 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 5119909-5121819 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0197400 |
Parent gene annotation |
Similar to COP9 signalosome complex subunit 4 (Signalosome subun it 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os03t0197400-01);Similar to COP9 signaloso me complex subunit 4 (Signalosome subunit 4) (Constitutive photo morphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os0 3t0197400-02) |
Parent gene strand | - |
Alternative splicing | Os03g0197400_circ_g.1 Os03g0197400_circ_g.3 Os03g0197400_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0197400-01:7 Os03t0197400-02:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.24966122 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5120683-5121810(-) 5119945-5121810(-) |
Potential amino acid sequence |
MIEHNLLSASKLYTNISFDELGALLGIDPRKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEE LQQWDQQRDR*(-) MTLKSCSSGTNREIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKV FLERILRKPEIEAFAEELRPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFDELGALLGID PRKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQQWDQQRDR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |