Detail information of Os03g0197400_circ_g.2


General Information
CircRNA Name Os03g0197400_circ_g.2
ID in PlantcircBase osa_circ_018371
Alias NA
Organism Oryza sativa
Position chr3: 5119909-5121819  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0197400
Parent gene annotation Similar to COP9 signalosome complex subunit 4 (Signalosome subun
it 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein
4) (FUSCA4) (AtS4). (Os03t0197400-01);Similar to COP9 signaloso
me complex subunit 4 (Signalosome subunit 4) (Constitutive photo
morphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4). (Os0
3t0197400-02)
Parent gene strand -
Alternative splicing Os03g0197400_circ_g.1 Os03g0197400_circ_g.3 Os03g0197400_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0197400-01:7
Os03t0197400-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGCAAGAACACGAGATCGTTGCGGACCAGCACCAGCCAATATTGTGCATGTCACAGCAGCA
CTAAGAGCTTGCTCCAAAGCATTTTCATCGATCTCTctgttggtcccactgctgcagctcttca
gtgtcatcctcaaaatgtatcacagcttcaacctgtaaaataagccaggcgagttaatctcata
acaacttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 125
Transcript exons: 5119909-5119955,5121742-5121819
CTGTTGGTCCCACTGCTGCAGCTCTTCAGTGTCATCCTCAAAATGTATGCGGACCAGCACCAGC
CAATATTGTGCATGTCACAGCAGCACTAAGAGCTTGCTCCAAAGCATTTTCATCGATCTCT

Transcript length: 478
Transcript exons: 5119909-5119968,5120127-5120186,5120514-5120556,5120632-
5120723,5120806-5120874,5120960-5121004,5121711-5121819
CTGTTGGTCCCACTGCTGCAGCTCTTCAGTGTCATCCTCAAAATGTATCACAGCTTCAACCTGA
TCAATTGAACCTCGCATCCTATCTTCATAAATCATTCGCGATGCTATCTTTTCAGCCTTCCTAG
GGTCAATGCCCAATAATGCTCCAAGCTCATCAAAGCTGATATTAGTGTAAAGTTTACTGGCACT
AAGGAGGTTATGCTCAATCATTGCCCGGTCAAGCACAGTAGACTTATCTGGTAACAGAGCTTTT
TGATGCGGTCTCAGCTCCTCTGCAAATGCTTCAATTTCTGGTTTCCTCAAAATCCTTTCAAGAA
AGACCTTCTGCAGTATTGGGTATATCTTCAACTTTGAGCATCTCTCATCCTTGTACAATGTAGC
AAGAACACGAGATCGTTGCGGACCAGCACCAGCCAATATTGTGCATGTCACAGCAGCACTAAGA
GCTTGCTCCAAAGCATTTTCATCGATCTCT

Genomic sequence CTGTTGGTCCCACTGCTGCAGCTCTTCAGTGTCATCCTCAAAATGTATCACAGCTTCAACCTGT
AAAATAAGCCAGGCGAGTTAATCTCATAACAACTTGAATTAAACCACAAACGGTAAAACATGGT
TACAGTGTAAGTCTATTTCAGATGTCTGCTCGAAATGGTGGAATAGTATGAATATCAACATAAG
GATTAAGGAAGTCATATGAATAAAACCTGATCAATTGAACCTCGCATCCTATCTTCATAAATCA
TTCGCGATGCTATCTTTTCAGCCTGCCAGCATCAAAATCAGTTGCAGTAAGACTCCAATTTGAA
TACTTTCATATTTAAAATCAAACATAAATAAAGAATTTATAGAGAAAATGCCAGTTCTTCCTGG
TACCAGTTACAGGCCAGATGATTTGAACTATCCTATTTGATTTTAAATTGTGAAATTCGGTGGT
TCTTCCCAGTTTGACTAGTTTCCAGCAAGTACCACTCAGAACCCATATATTCCAAATTCTTTTC
TTTTTCTTAGTCATATGGACTTTGTGTGAATCTGTCTCTATAAACATGAAATGATGTATCATAT
CAACAGGAAAAATTAACCAAAATACTAACCTTCCTAGGGTCAATGCCCAATAATGCTCCAAGCT
CATCAAAGCTACAGAAATAAATCAATAGTTGATCAGAATGATAAATCACAATGACCCAGGAAAA
TTTCAATGCAAAAACTAACCTGATATTAGTGTAAAGTTTACTGGCACTAAGGAGGTTATGCTCA
ATCATTGCCCGGTCAAGCACAGTAGACTTATCTGGTAACAGAGCTTTCTGTTGAACAGAAGAAA
AATCCAGTCAATAAAATTACAAGCTACTACTACAAGTTATCTTGGAAGAGAGTATGTTCACTAA
CTTGATGCGGTCTCAGCTCCTCTGCAAATGCTTCAATTTCTGGTTTCCTCAAAATCCTTTCAAG
AAAGACCTACACATTTGAAGTAGAAGGCCTGTCAATAAAGGGAGCTTATGCTCCAAATATAAAT
GCCAGGGGAGTATATCAAGATAGGCACCTTCTGCAGTATTGGGTATATCTTCAACTTTGAGCAT
CTCTCATCCTAAAGGGAAAAGACAGTATAAAATCATGCCACGAGTCATAATTTAAGCACCGCTA
TAATGAGAAAAATCAGATGCAAAACAATTGTATTTTCATGCTACTACAATGTTGATACAAGGTG
TTGGTTCATTTGATGACCATGATTACAGATTGGTCAACATCAAACAGTATGAAACTATAAACTA
CCCACTGAAACTGGATGCTAGCATATTTATTAGTTTAGCAGAACTATAAAAAAAATCCTAAATA
ACTATTTGGAAGGATCTTGATATTAGTAATTCAATATCAAATGGGTTAAGTTTTTGTATAATGA
TGCCACATTCCAATGAGTTCGGAGACAATTCCTCTGTTTCAATATACATACTTTTTTCCCCGGA
AAACATAAATTTTGGAGTGTACCAAGAATGATGTACAGTAAATGGGAATACAAATCACTGCGTA
AGGGAGAGAAGCCACAGCATGTATATCATAGTAAGCTAAAGCCACAACCTATGGTGCTCCATAA
CAGAAACCAATCAATATCGATACAGAGCTCTGCAGAGCATCTGATAATTCAGATTTGTCCATTT
GATAAACATGGCACAGGGAAAGGGCAAAGATGATTACGATAGTATGATACATAAAAAGTTATTG
CAGACAATAAATGACATGTAGATATAACAAGCACTGCAAACCAGAATGTTATGATAAACCAACA
AAGCAAATACCTTGTACAATGTAGCAAGAACACGAGATCGTTGCGGACCAGCACCAGCCAATAT
TGTGCATGTCACAGCAGCACTAAGAGCTTGCTCCAAAGCATTTTCATCGATCTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.24966122
Functional Information
Coding potential Y
Potential coding position 5120683-5121810(-)
5119945-5121810(-)
Potential amino acid sequence MIEHNLLSASKLYTNISFDELGALLGIDPRKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEE
LQQWDQQRDR*(-)
MTLKSCSSGTNREIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKV
FLERILRKPEIEAFAEELRPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFDELGALLGID
PRKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQQWDQQRDR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017