Detail information of Zm00001d013412_circ_g.2


General Information
CircRNA Name Zm00001d013412_circ_g.2
ID in PlantcircBase zma_circ_001893
Alias circ2069
Organism Zea mays
Position chr5: 10603017-10604517  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d013412
Parent gene annotation Histidine kinase 4
Parent gene strand -
Alternative splicing Zm00001d013412_circ_g.1
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d013412_T006:2
Zm00001d013412_T008:2
Zm00001d013412_T003:2
Zm00001d013412_T016:2
Zm00001d013412_T012:2
Zm00001d013412_T013:2
Zm00001d013412_T004:2
Zm00001d013412_T005:2
Zm00001d013412_T010:2
Zm00001d013412_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTAATTGAGTTGCCCACTAAATTTGTAATTATCTGTCGAAACCTTCCAGGATCACCCAACAA
GATTTCGGGAACTCTTTCAGAGACATATACATCAAGcctggttagggaactgccatttctcccg
gacagcacaccaagagccagttcaatggttgcaacaacatcacaggcaattcccagcctttgca
agtgatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTAGGGAACTGCCATTTCTCCCGGACAGCACACCAAGAGCCAGTTCAATGGTTGCAACA
ACATCACAGGCAATTCCCAGCCTTTGCAAGTGATACTTAGTTACAGTAGCTCTTACTGGTCTTC
TATCAACCAATAGTGCAGATAAACCTTTGAAACTGGATGGAAGAGGATGCAACATAACAGGCTT
ACTGTCACCAATAGCGCTTCTGTCACATCTTTTGAGAACCGCAGTAAATGTGAACGTACTCCCA
ACATGTGGTCGGCTGACAAAGTTTATCTGACCACCCATTAGTTCAACAAGACATTTGCTGATGC
TCAATCCAATTCCAGTACCACCATATGTCCTGGAAGTCGAACTATCAGCCTGCATGAAAGGTGT
GAACACCTTGGCTTGTGCATCCAATGGTATACCTATTCCTGTATCTTCCACACTTACTACAAGA
GTAACTTTATCAGATACACTTTCATAGGGCATCTCATTTTTCTCATAAGAAAGCAAAAGCTTGA
AGTTTTCCCAACTATTTCGGCTATCAGCAGCTTCAAAACCACTTAGTGTGTTGAGAGAAACACT
GGTTGCTACAGCAGTTTTCTCATCTGTATGTCCATTCATCCCATTAGCCACCGGCTCAACTTTG
GATTCTGTTGCAAGATTTGAATGATCTGCCAGATGAACTTGTACAAAAATATGTCCCCGTTCTG
TGAACTGTCAGTGCAAGCAAATATCAATCAGAAACTAAAGCTGGCCACAAATTTCAGAGTACTA
AGTAAACACTGCAGTGCAGTACATTTTGCTAAAACTAAGTTGTTCTATCTCTAGATAAAAATGG
CCCTCATTGTTTGCAGACATGTGTTGTCAATGCCTTTGTTGGGCCCCAGTACCAGTGCTGCCGG
CCCAGGCGTCAGGAGCAGATCCCCACCCATGTATGAGGGGGTCAGCTTTCGTGACTTTTCTAGG
CAGCTCCGGTTGAGCTCTTCTTAGCGAAACACCGTGGGGCGGTCTTTCCTGCACCGGCCGAGTT
TTTTAAAAACAGGGTGGTTGAGATCGGGCCGGATTGCAAGAGGATTTCCAGGGAAGTCTAGATC
AGTTGGTTTCTTTTCTAAAGCTAGATTGTTTCTATTTTGTTATAGAGTTTTCATCTATCAGAGG
GCCTCCTAGTCTATAAAAGAGATCGAGTCTATATGAGGCCTTTTCATCGAAGGAATAAGAAACT
CCCTGTTAGGGGCGGTTCCTTCGGTCCGCCAGCTGACTGGAACCAACCTTTTTCCTCCTCCTAC
CCCCTGCATTTTCTCCCTCAATCAGCTCTCCTTCTCCACTCTCCCCTAAATACGCACAAAAGGC
AATGCAGTAACAATAGCAGCATGCTTGAGAGGAAAGGTGAAAGGTCATGTACACTTACCTTAAT
TGAGTTGCCCACTAAATTTGTAATTATCTGTCGAAACCTTCCAGGATCACCCAACAAGATTTCG
GGAACTCTTTCAGAGACATATACATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.055962908
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b