Plant Circular RNA Database

Detail information of Os07g0301200_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os07g0301200_circ_g.8
					
						ID in PlantcircBase
						osa_circ_033434
					
						Alias
						Os_ciR4952
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 11889755-11892600  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0301200						
					
						Parent gene annotation
						
							Similar to RNA helicase (Fragment). (Os07t0301200-01);Similar to
 STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP-dependent helicase. (
Os07t0301200-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0301200_circ_g.2 Os07g0301200_circ_g.3 Os07g0301200_circ_g.4 Os07g0301200_circ_g.5 Os07g0301200_circ_g.6 Os07g0301200_circ_g.7 Os07g0301200_circ_g.9 Os07g0301200_circ_g.10 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0301200-01:4
Os07t0301200-02:3

General Information
CircRNA Name	Os07g0301200_circ_g.8
ID in PlantcircBase	osa_circ_033434
Alias	Os_ciR4952
Organism	Oryza sativa
Position	chr7: 11889755-11892600 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0301200
Parent gene annotation	Similar to RNA helicase (Fragment). (Os07t0301200-01);Similar to STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP-dependent helicase. ( Os07t0301200-02)
Parent gene strand	-
Alternative splicing	Os07g0301200_circ_g.2 Os07g0301200_circ_g.3 Os07g0301200_circ_g.4 Os07g0301200_circ_g.5 Os07g0301200_circ_g.6 Os07g0301200_circ_g.7 Os07g0301200_circ_g.9 Os07g0301200_circ_g.10
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0301200-01:4 Os07t0301200-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATGCATAGTTAACTTACCACAAAAGAAACATCATTAAGACGACAAATACCCATTTCAATAAG
GTCTTTCATACGACCAGGTGTCCCTATGACAATATCctctgtgctttatggtatttatcgagca
aagcaactaatcttgaatcccttgacctgtcatccaatacttcaacaatttgcatcacatcatg
gttagcag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 371
Transcript exons: 11889755-11889879,11889971-11890056,11890529-11890607,11
892520-11892600
CTCTGTGCTTTATGGTATTTATCGAGCAAAGCAACTAATCTTGAATCCCTTGACCTGTCATCCA
ATACTTCAACAATTTGCATCACATCATGGTTAGCAGCAAGATCTTCTGATCCAATAACAACCTT
TATTGGATTTGGATCCATAAACTCTTGGGCTAGCTGGTGGACAGCAGGAGGCCATGTAGCACTG
AACATAACCGTCTGACGTACAGATGCAGTTTGGCTTAAAATTGCTCTGACTTCAGGTTCAAAAC
CCATATCCAGCATTCGATCAGCTTCATCTAGAACCACAAAAGAAACATCATTAAGACGACAAAT
ACCCATTTCAATAAGGTCTTTCATACGACCAGGTGTCCCTATGACAATATC
						
					

						Genomic sequence
						
							CTCTGTGCTTTATGGTATTTATCGAGCAAAGCAACTAATCTTGAATCCCTTGACCTGTCATCCA
ATACTTCAACAATTTGCATCACATCATGGTTAGCAGCAAGATCTTCTGATCCAATAACAACCTA
CAACAAGGTGGCATACCACATACGGAAGGTCAGCATTACCGCATTAGCAATCAGATATTAACAA
GAGATAAGAAAAGAGAAACTATACCTTTATTGGATTTGGATCCATAAACTCTTGGGCTAGCTGG
TGGACAGCAGGAGGCCATGTAGCACTGAACATAACCGTCTGACGTACTGCACAGGAAGAATTAT
ATGGCCATGGTTGCAGATATATTCAGAAAAGATAACTAGGTGTAGTAACACATAAAATAAATGG
CAGTGTCAAATTGACATGAAAAAAATGTACAAATGTATTCCACCTACGCGGTATATTCATCACA
ATTTCAATATCATGGTAAGTAAAATATGCCAAGAGTTATGAATGCCATGAGGCTAAAGTGGTTT
TTTTAGCAACGTGATATAGAAGTATGAAAATCTTGAGAACAATATTTCTTGCTCATTTCTGCCG
TCACTAGTGGCTATTAACTTATGAGCACAAGTGTGCTGAATAAGGTATTAAAAACTATGGAGCA
AGAGGGCACATGCAACAGACTTTGTGGATAAGTCCAACCAGATAAAAAGGGATGAAAGGAAAAG
AATACATGCGATGCAAAGGTGGACATGCACATACACATGCCCTGAAAGGAAGAGAGTAATGGAG
ACAAACCAGATGCAGTTTGGCTTAAAATTGCTCTGACTTCAGGTTCAAAACCCATATCCAGCAT
TCGATCAGCTTCATCTAGAACCTTTATCAGTTACCAGACACGTCTGTGTTAGAAAGGACACTTA
CACTTCAAATGAGCAAAGCAATTAAACAGAATGAAAATTGACCAGCGCAAAATAAAAAATCCAG
GTAACATCACAGGTGTAACTTATTGAACCAATATTTACCATTGACTATGACCATCCTCACGAGT
CAAGTCCAGTTCAACAAAGGGGAGTAGGGGACAGAGGAGAGAGGGCATGGAAGAGACAAGAGGA
AATACCACTCAAATCTTAAAATGCCGAATCTGTTAGTGCTGGTAGGTTCCACAACCCTGATCTT
GTGGATGAAAATACATATACATTGGTGTGTCACTTGTATTGTCTTCTATAAATGACTACATTAT
CTGCTTATGTGTATATGCACTGTGGCCATTTAACCCAATATGAACTATGTACACTAGAAACCAG
CATAGTTCCTCAGCCATATTATTCTTAGGTAACAGCAAATTCAAGTTATAAAAATGATATAATT
CCTTTCATGTTGTGCATTATTAATTTTATGAAACAATCATTGACCAGTCAACCCAACTACTCAA
ATTTGATGGAACCAGGTGAGCCTTTAATGCCAAACTTGTGGCGTTATTATCAAGGGGGTAACAC
CAAAAAAAAAAAAAATCAGCGAACAAAGCAATCTTGACATGAGTGTTGCTACAACACCACCGAA
AGATCAATCATGCACCTGCGTTTCTCTCTAAGCTTGTCCCATGTTAAGAATCTTAGGGTCTGTT
TGGTTGTTGCCTAACATTGCCACAACTCAATTTGCCATAGGTGTGGCATGGCAAACAAAGTGTG
GCCAACAATTTGTTAGGTGCAATGAAGTTCTCCGGCCTCCAATGTAATACAACAAATAGATTCA
ACAACTGCACAAACATATTGTTTGTTAACTCAAAGTAACACTCAAACATCAATGACAAACTTCA
CAAATAAATAAAATTATATATATATATATATATATATATATATATATATATATAGAGAGAGAGA
GAGAGAGAGAGAGGACATATCGATGAAAATGATCTAAATGTTGGAAACTCGTGAAAATCATACC
TAAAAGTTTTGTAAATTCATGAAAAAAAATTACTAGAGATTGGTGTAGATATGAAATACATTCT
CACCAAATCTCAAATCCAAACTCAACTTCATTTAAGAGAAACAAAAAAGACAAATTTCGGGTGA
ATAGTGTCATGTTACTATTCACCTGAAATTTGTCTTTTTTGTTACTCCTAAACGAAGTTGAGTT
TGAACTTGAGATTTGATGAGAATGTATTTCACCTGCACCATGAATCACAACCATTCAATCATTC
CAAGATGCGTGCTTCCTAAATGGACATTACTTTCACAAATGAAGAGTTACTATAGGAGAAAAGA
TCAAGGAGGTACATGATGCATGTGTAGCTCTGGCATGGGACATGTAGTTCTGGGCAGAGATAGA
GGAAGTTGACCACACATCATGTAGTATTTATCCTTCATTTGAATATTGTTTCTTTTCTCTTGTT
ATCCATGGAATTTAGCATATATAACCATTTATTTAAATGTTTAGGTATAAACATTAACTTCTTT
ACTAACTAGTCCATATAAGTTTGAACTTAATTTGAATAGTTTTTTTGTTAAATTTTGATTCTAG
GTATATAACATCCATCCAAACTTATAATTAGTTAGGTATGTAATAATGGATTGTAAAATAAAGT
TGAATTTGAGTTGTTTGTTGCTAGGTATAGGTATGAATAAAATTCTTGTACCTGGGTATATACT
CAGAAGTTGAAAAAAATTCAAAAATTTGAGTGAATTTGTGTATTACATACCTTGGTGCCCGGGC
ACCATGGTGCCCCCATATGGGTGTATACTAATTCAAAACCATAGACAACAACACAATGAAATGC
ATAGTTAACTTACCACAAAAGAAACATCATTAAGACGACAAATACCCATTTCAATAAGGTCTTT
CATACGACCAGGTGTCCCTATGACAATATC
						
					

			
		

Sequences
Splice junction sequence	AAATGCATAGTTAACTTACCACAAAAGAAACATCATTAAGACGACAAATACCCATTTCAATAAG GTCTTTCATACGACCAGGTGTCCCTATGACAATATCctctgtgctttatggtatttatcgagca aagcaactaatcttgaatcccttgacctgtcatccaatacttcaacaatttgcatcacatcatg gttagcag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 371 Transcript exons: 11889755-11889879,11889971-11890056,11890529-11890607,11 892520-11892600 CTCTGTGCTTTATGGTATTTATCGAGCAAAGCAACTAATCTTGAATCCCTTGACCTGTCATCCA ATACTTCAACAATTTGCATCACATCATGGTTAGCAGCAAGATCTTCTGATCCAATAACAACCTT TATTGGATTTGGATCCATAAACTCTTGGGCTAGCTGGTGGACAGCAGGAGGCCATGTAGCACTG AACATAACCGTCTGACGTACAGATGCAGTTTGGCTTAAAATTGCTCTGACTTCAGGTTCAAAAC CCATATCCAGCATTCGATCAGCTTCATCTAGAACCACAAAAGAAACATCATTAAGACGACAAAT ACCCATTTCAATAAGGTCTTTCATACGACCAGGTGTCCCTATGACAATATC
Genomic sequence	CTCTGTGCTTTATGGTATTTATCGAGCAAAGCAACTAATCTTGAATCCCTTGACCTGTCATCCA ATACTTCAACAATTTGCATCACATCATGGTTAGCAGCAAGATCTTCTGATCCAATAACAACCTA CAACAAGGTGGCATACCACATACGGAAGGTCAGCATTACCGCATTAGCAATCAGATATTAACAA GAGATAAGAAAAGAGAAACTATACCTTTATTGGATTTGGATCCATAAACTCTTGGGCTAGCTGG TGGACAGCAGGAGGCCATGTAGCACTGAACATAACCGTCTGACGTACTGCACAGGAAGAATTAT ATGGCCATGGTTGCAGATATATTCAGAAAAGATAACTAGGTGTAGTAACACATAAAATAAATGG CAGTGTCAAATTGACATGAAAAAAATGTACAAATGTATTCCACCTACGCGGTATATTCATCACA ATTTCAATATCATGGTAAGTAAAATATGCCAAGAGTTATGAATGCCATGAGGCTAAAGTGGTTT TTTTAGCAACGTGATATAGAAGTATGAAAATCTTGAGAACAATATTTCTTGCTCATTTCTGCCG TCACTAGTGGCTATTAACTTATGAGCACAAGTGTGCTGAATAAGGTATTAAAAACTATGGAGCA AGAGGGCACATGCAACAGACTTTGTGGATAAGTCCAACCAGATAAAAAGGGATGAAAGGAAAAG AATACATGCGATGCAAAGGTGGACATGCACATACACATGCCCTGAAAGGAAGAGAGTAATGGAG ACAAACCAGATGCAGTTTGGCTTAAAATTGCTCTGACTTCAGGTTCAAAACCCATATCCAGCAT TCGATCAGCTTCATCTAGAACCTTTATCAGTTACCAGACACGTCTGTGTTAGAAAGGACACTTA CACTTCAAATGAGCAAAGCAATTAAACAGAATGAAAATTGACCAGCGCAAAATAAAAAATCCAG GTAACATCACAGGTGTAACTTATTGAACCAATATTTACCATTGACTATGACCATCCTCACGAGT CAAGTCCAGTTCAACAAAGGGGAGTAGGGGACAGAGGAGAGAGGGCATGGAAGAGACAAGAGGA AATACCACTCAAATCTTAAAATGCCGAATCTGTTAGTGCTGGTAGGTTCCACAACCCTGATCTT GTGGATGAAAATACATATACATTGGTGTGTCACTTGTATTGTCTTCTATAAATGACTACATTAT CTGCTTATGTGTATATGCACTGTGGCCATTTAACCCAATATGAACTATGTACACTAGAAACCAG CATAGTTCCTCAGCCATATTATTCTTAGGTAACAGCAAATTCAAGTTATAAAAATGATATAATT CCTTTCATGTTGTGCATTATTAATTTTATGAAACAATCATTGACCAGTCAACCCAACTACTCAA ATTTGATGGAACCAGGTGAGCCTTTAATGCCAAACTTGTGGCGTTATTATCAAGGGGGTAACAC CAAAAAAAAAAAAAATCAGCGAACAAAGCAATCTTGACATGAGTGTTGCTACAACACCACCGAA AGATCAATCATGCACCTGCGTTTCTCTCTAAGCTTGTCCCATGTTAAGAATCTTAGGGTCTGTT TGGTTGTTGCCTAACATTGCCACAACTCAATTTGCCATAGGTGTGGCATGGCAAACAAAGTGTG GCCAACAATTTGTTAGGTGCAATGAAGTTCTCCGGCCTCCAATGTAATACAACAAATAGATTCA ACAACTGCACAAACATATTGTTTGTTAACTCAAAGTAACACTCAAACATCAATGACAAACTTCA CAAATAAATAAAATTATATATATATATATATATATATATATATATATATATATAGAGAGAGAGA GAGAGAGAGAGAGGACATATCGATGAAAATGATCTAAATGTTGGAAACTCGTGAAAATCATACC TAAAAGTTTTGTAAATTCATGAAAAAAAATTACTAGAGATTGGTGTAGATATGAAATACATTCT CACCAAATCTCAAATCCAAACTCAACTTCATTTAAGAGAAACAAAAAAGACAAATTTCGGGTGA ATAGTGTCATGTTACTATTCACCTGAAATTTGTCTTTTTTGTTACTCCTAAACGAAGTTGAGTT TGAACTTGAGATTTGATGAGAATGTATTTCACCTGCACCATGAATCACAACCATTCAATCATTC CAAGATGCGTGCTTCCTAAATGGACATTACTTTCACAAATGAAGAGTTACTATAGGAGAAAAGA TCAAGGAGGTACATGATGCATGTGTAGCTCTGGCATGGGACATGTAGTTCTGGGCAGAGATAGA GGAAGTTGACCACACATCATGTAGTATTTATCCTTCATTTGAATATTGTTTCTTTTCTCTTGTT ATCCATGGAATTTAGCATATATAACCATTTATTTAAATGTTTAGGTATAAACATTAACTTCTTT ACTAACTAGTCCATATAAGTTTGAACTTAATTTGAATAGTTTTTTTGTTAAATTTTGATTCTAG GTATATAACATCCATCCAAACTTATAATTAGTTAGGTATGTAATAATGGATTGTAAAATAAAGT TGAATTTGAGTTGTTTGTTGCTAGGTATAGGTATGAATAAAATTCTTGTACCTGGGTATATACT CAGAAGTTGAAAAAAATTCAAAAATTTGAGTGAATTTGTGTATTACATACCTTGGTGCCCGGGC ACCATGGTGCCCCCATATGGGTGTATACTAATTCAAAACCATAGACAACAACACAATGAAATGC ATAGTTAACTTACCACAAAAGAAACATCATTAAGACGACAAATACCCATTTCAATAAGGTCTTT CATACGACCAGGTGTCCCTATGACAATATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.223282127

Conservation Information
Conserved circRNAs	NA
PMCS	0.223282127

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11892591-11889848(+)
11892575-11892590(-)
						
						Potential amino acid sequence
						
							MTISSVLYGIYRAKQLILNPLTCHPILQQFASHHG*(+)
MKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQ
EFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRILS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11892591-11889848(+) 11892575-11892590(-)
Potential amino acid sequence	MTISSVLYGIYRAKQLILNPLTCHPILQQFASHHG(+) MKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQ EFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRILS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0301200_circ_g.8

Address

Any questions?

Supported by