Plant Circular RNA Database

Detail information of Os02g0639000_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0639000_circ_g.2
					
						ID in PlantcircBase
						osa_circ_015732
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 25628679-25633719  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0639000						
					
						Parent gene annotation
						
							Double stranded RNA binding domain (dsRBD) containing protein, R
egulation of stress responses (Os02t0639000-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0639000_circ_g.1 Os02g0639000_circ_g.3 Os02g0639000_circ_g.4 Os02g0639000_circ_g.5 Os02g0639000_circ_g.6 Os02g0639000_circ_g.7 Os02g0639000_circ_g.8 Os02g0639000_circ_g.9 Os02g0639000_circ_g.10 Os02g0639000_circ_g.11 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0639000-01:12

General Information
CircRNA Name	Os02g0639000_circ_g.2
ID in PlantcircBase	osa_circ_015732
Alias	NA
Organism	Oryza sativa
Position	chr2: 25628679-25633719 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0639000
Parent gene annotation	Double stranded RNA binding domain (dsRBD) containing protein, R egulation of stress responses (Os02t0639000-01)
Parent gene strand	+
Alternative splicing	Os02g0639000_circ_g.1 Os02g0639000_circ_g.3 Os02g0639000_circ_g.4 Os02g0639000_circ_g.5 Os02g0639000_circ_g.6 Os02g0639000_circ_g.7 Os02g0639000_circ_g.8 Os02g0639000_circ_g.9 Os02g0639000_circ_g.10 Os02g0639000_circ_g.11
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0639000-01:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GTTACCAATTGCAAGTACTTCAGAAGAAACTCGCTTTGTGAAGATGGGGGAGAACAATTCCAGA
AAAGCAGGAGGTTCTATTGCTGCTCTCAAGGAACTTactgcagttgttccactaggagaggaag
aattgcatttagtggcaatgacatccaggagaaacctgacaaatcacgcatgtttctggggata
taaagtgc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GTTACCAATTGCAAGTACTTCAGAAGAAACTCGCTTTGTGAAGATGGGGGAGAACAATTCCAGA AAAGCAGGAGGTTCTATTGCTGCTCTCAAGGAACTTactgcagttgttccactaggagaggaag aattgcatttagtggcaatgacatccaggagaaacctgacaaatcacgcatgtttctggggata taaagtgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.116553989

Conservation Information
Conserved circRNAs	NA
PMCS	0.116553989

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							25628725-25633716(+)
						
					

						Potential amino acid sequence
						
							MTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRK
LSNETDPQRINGMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPV
IRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRL
LDPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVP
AFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVG
NYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSS
SVAPVAPSLGMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQ
HGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQL
PHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRN
NQIVPGQHFARHAGSSAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTR
KEAQCQAAEISLRNLANKYLSSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRF
VKMGENNSRKAGGSIAALKELTAVVPLGEEELHLVAMTSRRNLTNHACFWGYKVPFGLYNSCLT
MLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRYQDDKSILK
QYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRP
AWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDPDSRLINSVQLNDRMVCVKSGLRKSL
LNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACN
VRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADA
EVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPVA
QLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPTPPLPAVPPVQVPVPPVQPH
GNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQL
PHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCG
SKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMT
DMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRFVKMGENNSRKAGGSIAALKELTAVVPLG
EEELHLVAMTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFED
RIDALQRKLSNETDPQRINGMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDN
HQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERD
YALEMWRLLDPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKD
QSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINE
IPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVL
PGQNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDT
RRRLLILQHGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESET
MHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATR
HVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKV
GEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIA
STSEETRFVKMGENNSRKAGGSIAALKELTAVVPLGEEELHLVAMTSRRNLTNHACFWGYKVPF
GLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRY
QDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKNIILTRINPLIRDT
SVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDPDSRLINSVQLNDRMVCV
KSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLC
VARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPL
AFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSSSVAPVAPSLGMVPLSNNQGP
PPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPTPPLPAVPPVQV
PVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQ
NQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGIL
EEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYL
SSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRFVKMGENNSRKAGGSIAALKE
L(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	25628725-25633716(+)
Potential amino acid sequence	MTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRK LSNETDPQRINGMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPV IRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRL LDPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVP AFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVG NYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSS SVAPVAPSLGMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQ HGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQL PHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRN NQIVPGQHFARHAGSSAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTR KEAQCQAAEISLRNLANKYLSSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRF VKMGENNSRKAGGSIAALKELTAVVPLGEEELHLVAMTSRRNLTNHACFWGYKVPFGLYNSCLT MLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRYQDDKSILK QYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRP AWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDPDSRLINSVQLNDRMVCVKSGLRKSL LNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACN VRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADA EVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPVA QLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPTPPLPAVPPVQVPVPPVQPH GNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQL PHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCG SKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMT DMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRFVKMGENNSRKAGGSIAALKELTAVVPLG EEELHLVAMTSRRNLTNHACFWGYKVPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFED RIDALQRKLSNETDPQRINGMIAEIKRYQDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDN HQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERD YALEMWRLLDPDSRLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKD QSRVHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINE IPSAPDVGNYLISEDENVAAVNGNRDPLAFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVL PGQNFVSSSVAPVAPSLGMVPLSNNQGPPPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDT RRRLLILQHGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESET MHYDKKQLPHPFFHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATR HVSSSQRNNQIVPGQHFARHAGSSAGILEEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKV GEGIGRTRKEAQCQAAEISLRNLANKYLSSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIA STSEETRFVKMGENNSRKAGGSIAALKELTAVVPLGEEELHLVAMTSRRNLTNHACFWGYKVPF GLYNSCLTMLNLRCLGIVFDLDETLIVANTTRSFEDRIDALQRKLSNETDPQRINGMIAEIKRY QDDKSILKQYIEGDQVYDDGKMYKVQPELVPPLSDNHQPMTRPVIRLQEKNIILTRINPLIRDT SVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDPDSRLINSVQLNDRMVCV KSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSIPVLC VARNVACNVRGGFFKDFDEGLLPRISNVFYEDEINEIPSAPDVGNYLISEDENVAAVNGNRDPL AFDGMADAEVERRMKEASGNAQAFTTTAANFVMPVLPGQNFVSSSVAPVAPSLGMVPLSNNQGP PPFTQPVAQLSLSDPLQGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPTPPLPAVPPVQV PVPPVQPHGNWFPVEDGMNPNNLNRGSAGFPLESETMHYDKKQLPHPFFHGGENPISSDRFSYQ NQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRNNQIVPGQHFARHAGSSAGIL EEIAMKCGSKVEYRSALCDTADLQFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNLANKYL SSDPNKMTDMKENGFGSNTNIFGYPGNSRDDVLPIASTSEETRFVKMGENNSRKAGGSIAALKE L(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0639000_circ_g.2

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