Detail information of Os01g0659200_circ_g.4


General Information
CircRNA Name Os01g0659200_circ_g.4
ID in PlantcircBase osa_circ_040560
Alias NA
Organism Oryza sativa
Position chr1: 26814748-26815274  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os01g0659200
Parent gene annotation Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPa
se E subunit) (Vacuolar proton pump E subunit). (Os01t0659200-01
)
Parent gene strand +
Alternative splicing Os01g0659200_circ_g.2 Os01g0659200_circ_g.3 Os01g0659200_circ_g.5 Os01g0659200_circ_g.6 Os01g0659200_circ_g.7 Os01g0659200_circ_g.8 Os01g0659200_circ_g.9 Os01g0659200_circ_g.10 Os01g0659200_circ_g.11 Os01g0659200_circ_g.12 Os01g0659200_circ_g.13 Os01g0659200_circ_g.15 Os01g0659200_circ_g.16
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0659200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGACCATCATCATGTGGAATCTGTACTGCATTCAGCAAAGAATGAATATGCGTCAAAAGCA
GAAGTTCATCACCCAGAGATACTTGTTGACCACGATaaccttttgaaagaactcgtcgttcagg
tttgtatgaaatgttgaatacatcatctgctagattcttatccattaagcctttttgagcgatc
cttctgat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 174
Transcript exons: 26814748-26814774,26815128-26815274
AACCTTTTGAAAGAACTCGTCGTTCAGGGTTTGCTTCGGTTGAAAGAGCCAGCGGTACTTCTCC
GTTGCCGCAAAGAAGACCATCATCATGTGGAATCTGTACTGCATTCAGCAAAGAATGAATATGC
GTCAAAAGCAGAAGTTCATCACCCAGAGATACTTGTTGACCACGAT

Genomic sequence AACCTTTTGAAAGAACTCGTCGTTCAGGTTTGTATGAAATGTTGAATACATCATCTGCTAGATT
CTTATCCATTAAGCCTTTTTGAGCGATCCTTCTGATAATTGTGGACCCCAAGAGGGTTTCACCT
ATATAGTTAAGTTCGATACGCAGAACTGAATTATTGGATATTGAAGTGTTAAATCACATTGTAG
TTTTGCAACTCTAACTGCATGCACAAAAGAGCTAGTGCTAAAAGAACATCTGTTTATGATTCAC
CTTTAAACTTCTCTTATGGACGTGTCAATTTAATTGATGGAATTAAGTTTGAAATGCCATCTCC
TTGTTTGTTCACTACTGTTATTAACAAAATAATCATTCATCATATTGACTGGAAATACAGGGTT
TGCTTCGGTTGAAAGAGCCAGCGGTACTTCTCCGTTGCCGCAAAGAAGACCATCATCATGTGGA
ATCTGTACTGCATTCAGCAAAGAATGAATATGCGTCAAAAGCAGAAGTTCATCACCCAGAGATA
CTTGTTGACCACGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.147059709
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study