Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G15290_circ_g.3 |
ID in PlantcircBase | ath_circ_002677 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5259253-5259890 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G15290 |
Parent gene annotation |
Tetratricopeptide repeat (TPR)-like superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G15290_circ_g.1 AT1G15290_circ_g.2 AT1G15290_circ_g.4 AT1G15290_circ_g.5 AT1G15290_circ_g.6 AT1G15290_circ_g.7 |
Support reads | 2 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G15290.2:3 AT1G15290.1:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.25379588 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5259806-5259255(-) |
Potential amino acid sequence |
MMEKEVGNDHLALRYLHEALKSNKRLLGADHIQTAASYHAIAVALSFMEAHSLSVQHEQTTLQI LTAKLGADDLRTQDAAAWLEYFESRAIEQQEAGRNGIPKPDASIASKGHLRYVNRALFLLHFTC GLSHPNTAATYINVAMMEKEVGNDHLALRYLHEALKSNKRLLGADHIQTAASYHAIAVALSFME AHSLSVQHEQTTLQILTAKLGADDLRTQDAAAWLEYFESRAIEQQEAGRNGIPKPDASIASKGH LRYVNRALFLLHFTCGLSHPNTAATYINVAMMEKEVGNDHLALRYLHEALKSNKRLLGADHIQT AASYHAIAVALSFMEAHSLSVQHEQTTLQILTAKLGADDLRTQDAAAWLEYFESRAIEQQEAGR NGIPKPDASIASKGHLRYVNRALFLLHFTCGLSHPNTAATYINVAMMEKEVGNDHLALRYLHEA LKSNKRLLGADHIQTAASYHAIAVALSFMEAHSLSVQHEQTTLQILTAKLGADDLRTQDAAAWL EYFESRAIEQQEAGRNGIPKPDASIASKGHL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Pan et al., 2017 |